refactor: import filterFeatures from ProtGenerics

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: QFeatures
 Title: Quantitative features for mass spectrometry data
-Version: 1.13.1
+Version: 1.13.2
 Authors@R: c(person("Laurent", "Gatto",
                     email = "[email protected]",
                     comment = c(ORCID = "0000-0002-1520-2268"),
@@ -24,7 +24,7 @@ Imports:
    IRanges,
    SummarizedExperiment,
    BiocGenerics,
-   ProtGenerics (>= 1.27.1),
+   ProtGenerics (>= 1.35.1),
    AnnotationFilter,
    lazyeval,
    Biobase,
@@ -82,4 +82,4 @@ Collate:
     'utils.R'
     'display.R'
 Roxygen: list(markdown=TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.0

NAMESPACE

@@ -92,3 +92,4 @@ importFrom(methods,slot)
 importFrom(methods,validObject)
 importFrom(stats,heatmap)
 importFrom(utils,read.csv)
+importMethodsFrom(ProtGenerics,filterFeatures)

NEWS.md

@@ -1,5 +1,9 @@
 # QFeatures 1.13
 
+## QFeatures 1.13.2
+
+- Move the `filterFeatures` generic method to `ProtGenerics`.
+
 ## QFeatures 1.13.1
 
 - Fix typo in vigette.

R/AllGenerics.R

@@ -4,10 +4,6 @@
 ##' @rdname AllGenerics
 NULL
 
-
-setGeneric("filterFeatures",
-           function(object, filter, ...) standardGeneric("filterFeatures"))
-
 setGeneric("subsetByFeature",
            function(x, y, ...) standardGeneric("subsetByFeature"))
 

R/QFeatures-filter.R

@@ -236,6 +236,8 @@ VariableFilter <- function(field,
 ##'
 ##' @exportMethod filterFeatures
 ##'
+##' @importMethodsFrom ProtGenerics filterFeatures
+##' 
 ##' @rdname QFeatures-filtering
 setMethod("filterFeatures",
           c("QFeatures", "AnnotationFilter"),