-
Notifications
You must be signed in to change notification settings - Fork 29
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge branch 'TASK-7100' of github.com:opencb/jsorolla into TASK-7100
- Loading branch information
Showing
3 changed files
with
232 additions
and
8 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,199 @@ | ||
| /** | ||
| * Copyright 2015-2024 OpenCB | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
|
|
||
| import {html, LitElement} from "lit"; | ||
| import LitUtils from "../commons/utils/lit-utils.js"; | ||
| import NotificationUtils from "../commons/utils/notification-utils.js"; | ||
| import UtilsNew from "../../core/utils-new.js"; | ||
|
|
||
|
|
||
| export default class FileFetch extends LitElement { | ||
|
|
||
| constructor() { | ||
| super(); | ||
|
|
||
| this.#init(); | ||
| } | ||
|
|
||
| createRenderRoot() { | ||
| return this; | ||
| } | ||
|
|
||
| static get properties() { | ||
| return { | ||
| path: { | ||
| type: String, | ||
| }, | ||
| opencgaSession: { | ||
| type: Object | ||
| }, | ||
| displayConfig: { | ||
| type: Object | ||
| }, | ||
| }; | ||
| } | ||
|
|
||
| #init() { | ||
| this.JOB_ID = "file-fetch"; | ||
|
|
||
| this.displayConfigDefault = { | ||
| style: "margin: 10px", | ||
| titleWidth: 3, | ||
| defaultLayout: "horizontal", | ||
| buttonOkText: "Fetch File", | ||
| buttonClearText: "Discard Changes", | ||
|
|
||
| }; | ||
| this.#initOriginalObjects(); | ||
| } | ||
|
|
||
| #initOriginalObjects() { | ||
| this._data = {}; | ||
| this._config = this.getDefaultConfig(); | ||
| } | ||
|
|
||
| #setLoading(value) { | ||
| this.isLoading = value; | ||
| this.requestUpdate(); | ||
| } | ||
|
|
||
| update(changedProperties) { | ||
| if (changedProperties.has("path")) { | ||
| this._data.path = `/${this.path}`; | ||
| } | ||
| if (changedProperties.has("displayConfig")) { | ||
| this.displayConfig = { | ||
| ...this.displayConfigDefault, | ||
| ...this.displayConfig | ||
| }; | ||
| this._config = this.getDefaultConfig(); | ||
| } | ||
| super.update(changedProperties); | ||
| } | ||
|
|
||
| onFieldChange(e) { | ||
| this._data = {...e.detail.data}; // force to refresh the object-list | ||
| this.requestUpdate(); | ||
| } | ||
|
|
||
| onClear() { | ||
| NotificationUtils.dispatch(this, NotificationUtils.NOTIFY_CONFIRMATION, { | ||
| title: "Clear Fetch File", | ||
| message: "Are you sure to clear?", | ||
| ok: () => { | ||
| this.#initOriginalObjects(); | ||
| this.requestUpdate(); | ||
| }, | ||
| }); | ||
| } | ||
|
|
||
| onSubmit() { | ||
| const {jobId, ...data} = this._data; | ||
| const params = { | ||
| study: this.opencgaSession.study.fqn, | ||
| jobId: jobId ?? `${this.JOB_ID}-${UtilsNew.getDatetime()}`, | ||
| }; | ||
| debugger | ||
| this.#setLoading(true); | ||
| debugger | ||
| this.opencgaSession.opencgaClient.files() | ||
| .fetch(data, params) | ||
| .then(() => { | ||
| this.#initOriginalObjects(); | ||
| NotificationUtils.dispatch(this, NotificationUtils.NOTIFY_SUCCESS, { | ||
| title: "Job launched", | ||
| message: `Job ${jobId} has been launched successfully`, | ||
| }); | ||
| LitUtils.dispatchCustomEvent(this, "fileFetch", data); | ||
| }) | ||
| .catch(error => { | ||
| NotificationUtils.dispatch(this, NotificationUtils.NOTIFY_RESPONSE, error); | ||
| }) | ||
| .finally(() => { | ||
| this.#setLoading(false); | ||
| }); | ||
| } | ||
|
|
||
|
|
||
| render() { | ||
| if (this.isLoading) { | ||
| return html`<loading-spinner></loading-spinner>`; | ||
| } | ||
|
|
||
| return html` | ||
| <data-form | ||
| .data="${this._data}" | ||
| .config="${this._config}" | ||
| @fieldChange="${e => this.onFieldChange(e)}" | ||
| @clear="${e => this.onClear(e)}" | ||
| @submit="${e => this.onSubmit(e)}"> | ||
| </data-form>`; | ||
| } | ||
|
|
||
| getDefaultConfig() { | ||
| return { | ||
| display: this.displayConfig || this.displayConfigDefault, | ||
| sections: [ | ||
| { | ||
| title: "General Information", | ||
| elements: [ | ||
| { | ||
| title: "URL", | ||
| field: "url", | ||
| type: "input-text", | ||
| required: true, | ||
| }, | ||
| { | ||
| title: "Path", | ||
| field: "path", | ||
| type: "input-text", | ||
| required: true, | ||
| display: { | ||
| defaultValue: `/${this.path}`, | ||
| disabled: true, | ||
| }, | ||
| }, | ||
| ], | ||
| }, | ||
| /* | ||
| Note 20241210 Vero: It has been discussed and decided not to utilise the analysis-utils component for | ||
| populating the job parameters. It has issues, such as invoking the onClear() method after submitting | ||
| the query or using the button name "Run Analysis". | ||
| If the analysis-tools component is intended to be reusable for endpoints that execute jobs but are not | ||
| true analysis tools, it will need to be refactored. | ||
| */ | ||
| { | ||
| title: "Job Info", | ||
| elements: [ | ||
| { | ||
| title: "Job ID", | ||
| field: "jobId", | ||
| type: "input-text", | ||
| display: { | ||
| placeholder: `${this.JOB_ID}-${UtilsNew.getDatetime()}`, | ||
| help: { | ||
| text: "If empty then it is automatically initialized with the tool ID and current date" | ||
| } | ||
| }, | ||
| }, | ||
| ], | ||
| } | ||
| ], | ||
| }; | ||
| } | ||
| } | ||
|
|
||
| customElements.define("file-fetch", FileFetch); |