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Merge remote-tracking branch 'origin/TASK-7100' into TASK-7100
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@gpveronica
gpveronica committed Dec 10, 2024
2 parents e9a48ce + f51515c commit 4026a48
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Showing 2 changed files with 17 additions and 126 deletions.
133 changes: 11 additions & 122 deletions src/sites/iva/conf/config.js
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Original file line number Diff line number Diff line change
Expand Up @@ -570,17 +570,12 @@ const SUITE = {
logoWidth: "100px",
},
title: "Research Environment",
subtitle: "Explore variants in real-time and execute analysis.",
// subtitle: "Explore variants in real-time and execute analysis.",
content: `
Variant Research Environment App implements different tools to focus on the analysis and interpretation of genomic variants
to understand their role in diseases, traits, and biological processes. It involves the use of our aggregated variant database,
bioinformatics tools, workflows, notebooks, and computational methods to identify, classify, and study variants for personalized medicine and genetic research.
`,
// links: [
// {
// title: "Documentation", url: "http://docs.opencb.org/display/iva"
// },
// ]
},
menu: [
{
Expand Down Expand Up @@ -648,16 +643,6 @@ const SUITE = {
description: "Manage your data in the cloud",
},
],
// fileExplorer: {
// visibility: "private"
// },
// jobMonitor: {
// visibility: "private"
// },
// search: {
// placeholder: "Search",
// visible: false
// },
},
{
id: "clinical",
Expand All @@ -670,11 +655,6 @@ const SUITE = {
visibility: "public",
welcomePage: {
title: "Clinical Analysis",
// display: {
// titleStyle: "text-align:center;",
// subtitleStyle: "text-align:center;",
// logoWidth: "100px",
// },
// subtitle: "Interactive Case Interpreter",
content: `
Welcome to the OpenCB Clinical Analysis Application.
Expand Down Expand Up @@ -747,16 +727,6 @@ const SUITE = {
thumbnail: "interpretation_portal.png",
},
],
// fileExplorer: {
// visibility: "private"
// },
// jobMonitor: {
// visibility: "private"
// },
// search: {
// placeholder: "Search",
// visible: false
// },
},
{
id: "catalog",
Expand All @@ -769,14 +739,7 @@ const SUITE = {
visibility: "public",
welcomePage: {
title: "Data Catalog",
// display: {
// titleStyle: "text-align:center;",
// subtitleStyle: "text-align:center;",
// logoWidth: "100px",
// },
subtitle: "",
// logo: "img/Zetta_logo.png",
// logo: "img/tools/icons/interpretation_portal.svg",
// subtitle: "",
content: `
Welcome to the Data Catalog Application.
This app allows clinicians to create cases, execute clinical interpretations and create clinical reports.
Expand Down Expand Up @@ -874,16 +837,6 @@ const SUITE = {
// `,
// },
],
// fileExplorer: {
// visibility: "private"
// },
// jobMonitor: {
// visibility: "private"
// },
// search: {
// placeholder: "Search",
// visible: false
// },
},
{
id: "admin",
Expand All @@ -894,104 +847,40 @@ const SUITE = {
logoAlt: "img/tools/icons/file_explorer.svg",
visibility: "public",
welcomePage: {
display: {
titleStyle: "text-align:center;",
subtitleStyle: "text-align:center;",
logoWidth: "100px",
},
title: "Admin",
// subtitle: "",
logo: "img/tools/icons/file_explorer.svg",
content: `
<p class="text-center">
Welcome to the OpenCB Administration Application
</p>
<br>`
content: "Administration tools for managing users, projects, and studies.",
},
menu: [
{
id: "organization-admin",
name: "Organizations Admin",
fa_icon: "fas fa-file-invoice",
icon: "img/tools/icons/variant_browser.svg",
description: "",
icon: "fa-building",
description: "Manage the configuration of the current organization.",
visibility: "public",
featured: true,
},
{
id: "study-admin",
name: "Study Admin",
fa_icon: "fas fa-file-invoice",
icon: "img/tools/icons/variant_browser.svg",
description: "",
icon: "fa-file-invoice",
description: "Manage the configuration of the current study.",
visibility: "public",
featured: true,
},
// {
// id: "variant-admin",
// name: "Variant database",
// fa_icon: "fas fa-file-invoice",
// icon: "img/tools/icons/variant_browser.svg",
// description: "",
// visibility: "public",
// featured: false,
// },
{
id: "study-admin-iva",
name: "IVA Configuration",
fa_icon: "fas fa-file-invoice",
icon: "img/tools/icons/variant_browser.svg",
description: "",
icon: "fa-cogs",
description: "Manage the configuration of the current IVA instance.",
visibility: "public",
featured: true,
},
// {
// id: "catalog-admin",
// name: "Catalog Management",
// fa_icon: "fas fa-file-invoice",
// icon: "img/tools/icons/variant_browser.svg",
// description: "",
// visibility: "public",
// featured: false,
// },
// {
// id: "study-variant-admin",
// name: "Study Variant Admin",
// fa_icon: "fas fa-file-invoice",
// icon: "img/tools/icons/variant_browser.svg",
// description: "",
// visibility: "public",
// featured: true,
// },
{
id: "operations-admin",
name: "Operations Admin",
fa_icon: "fas fa-file-invoice",
icon: "img/tools/icons/variant_browser.svg",
description: "",
icon: "fa-server",
description: "Execute variant operations in the current study.",
visibility: "public",
featured: true,
},
// {
// id: "projects-admin",
// name: "Project Manager",
// fa_icon: "fas fa-file-invoice",
// icon: "img/tools/icons/variant_browser.svg",
// description: "",
// visibility: "public",
// featured: true,
// },
],
// fileExplorer: {
// visibility: "private"
// },
// jobMonitor: {
// visibility: "none"
// },
// search: {
// placeholder: "Search",
// visible: false
// },
}
]
};
Expand Down
10 changes: 6 additions & 4 deletions src/webcomponents/commons/pages/welcome-page.js
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Original file line number Diff line number Diff line change
Expand Up @@ -112,8 +112,8 @@ export default class WelcomePage extends LitElement {
<!-- Welcome page title -->
${welcomePage?.title ? html`
<div class="mb-4">
<div class="d-flex align-items-center">
<div class="">
<div class="d-flex align-items-center mb-2">
${welcomePage.appLogo?.img ? html`
<img src="${welcomePage.appLogo?.img}" height="${welcomePage.appLogo?.height || "40px"}"/>
` : nothing}
Expand All @@ -122,8 +122,10 @@ export default class WelcomePage extends LitElement {
</div>
</div>
${welcomePage?.subtitle ? html`
<div class="${welcomePage.display?.subtitleClass || "display-6 text-gray-700 fw-medium"}" style="${welcomePage.display?.subtitleStyle}">
${welcomePage.subtitle}
<div class="mb-4">
<div class="${welcomePage.display?.subtitleClass || "display-6 text-gray-700 fw-medium"}" style="${welcomePage.display?.subtitleStyle}">
${welcomePage.subtitle}
</div>
</div>
` : nothing}
</div>
Expand Down

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