Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Stomatogastric ganglion cell types of crabs, lobsters #2876

Open
wants to merge 13 commits into
base: master
Choose a base branch
from
Open

Stomatogastric ganglion cell types of crabs, lobsters #2876

Show file tree
Hide file tree
Changes from 7 commits
Commits
Show all changes
13 commits
Select commit Hold shift + click to select a range
f73b7f8
Create new_changes_CL
andreagaede Dec 19, 2024
ba0965e
Merge branch 'obophenotype:master' into stomatogastric_gagnglion_crab…
stevevanhooser Jan 6, 2025
305b313
Update new_changes_CL
stevevanhooser Jan 6, 2025
301fb69
new updates in owl language for stomatogastric ganglion of crabs and …
stevevanhooser Jan 7, 2025
562c014
cleaning so only edits to cl-edit.owl remain
stevevanhooser Jan 7, 2025
afa56d9
fixes during review
stevevanhooser Jan 7, 2025
e9170c7
Merge branch 'master' into stomatogastric_ganglion_crab_lobster
stevevanhooser Jan 7, 2025
54dd307
fixes during review 2
stevevanhooser Jan 7, 2025
2feed34
Merge branch 'stomatogastric_ganglion_crab_lobster' of https://github…
stevevanhooser Jan 7, 2025
79ea493
improved definition for lateral pyloric neuron, pyloric neuron
stevevanhooser Jan 7, 2025
eea1538
NCBITaxon_ corrected, changed SubClass to Annotation
stevevanhooser Jan 7, 2025
d3fa9b6
fix reintroduced NCBITaxon:
stevevanhooser Jan 7, 2025
282fd3b
change UBERON: to UBERON_
stevevanhooser Jan 7, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 0 additions & 1 deletion src/ontology/CHANGES
View file
Open in desktop

This file was deleted.

106 changes: 105 additions & 1 deletion src/ontology/cl-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3146,6 +3146,14 @@ Declaration(Class(obo:CL_4052030))
Declaration(Class(obo:CL_4052031))
Declaration(Class(obo:CL_4052048))
Declaration(Class(obo:CL_4052049))
Declaration(Class(obo:CL_4070010))
Declaration(Class(obo:CL_4070011))
Declaration(Class(obo:CL_4070012))
Declaration(Class(obo:CL_4070013))
Declaration(Class(obo:CL_4070014))
Declaration(Class(obo:CL_4070015))
Declaration(Class(obo:CL_4070016))
Declaration(Class(obo:CL_4070017))
Declaration(Class(obo:CP_0000000))
Declaration(Class(obo:CP_0000025))
Declaration(Class(obo:CP_0000027))
Expand Down Expand Up @@ -33507,6 +33515,102 @@ SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_001576
SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036376))
SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_1990573))

# Class: obo:CL_4070010 (gastric mill neuron)

AnnotationAssertion(rdfs:label obo:CL_4070010 "gastric mill neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070010 "GM")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070010 "A motor neuron that moves the medial tooth forward")
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
AnnotationAssertion(terms:contributor obo:CL_4070010 <https://orcid.org/0000-0002-1909-7004>)
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
SubClassOf(obo:CL_4070010 obo:CL_0000100)
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6657))
SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6712))
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6752))
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved

# Class: obo:CL_4070011 (lateral gastric neuron)

AnnotationAssertion(rdfs:label obo:CL_4070011 "lateral gastric neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070011 "LG")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070011 "A motor neuron that closes the lateral teeth")
AnnotationAssertion(terms:contributor obo:CL_4070011 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070011 obo:CL_0000100)
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6657))
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070012 (inferior cardiac neuron)

AnnotationAssertion(rdfs:label obo:CL_4070012 "inferior cardiac neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070012 "IC")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070012 "A motor neuron that controls ventral stomach grooves leading to pyloric filter")
AnnotationAssertion(terms:contributor obo:CL_4070012 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070012 obo:CL_0000100)
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6657))
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070013 (ventricular dilator motor neurons)

AnnotationAssertion(rdfs:label obo:CL_4070013 "ventricular dilator motor neurons")
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070013 "VD")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070013 "A motor neuron that controls ventral stomach grooves leading to pyloric filter")
AnnotationAssertion(terms:contributor obo:CL_4070013 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070013 obo:CL_0000100)
SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6657))
SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6712))
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070014 (pyloric motor neuron)

AnnotationAssertion(rdfs:label obo:CL_4070014 "pyloric motor neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070014 "PY")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID:6296329") obo:IAO_0000115 obo:CL_4070014 "A motor neuron that controls pyloric filter movements")
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
AnnotationAssertion(terms:contributor obo:CL_4070014 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070014 obo:CL_0000100)
SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6657))
SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070015 (pyloric dilator)

AnnotationAssertion(rdfs:label obo:CL_4070015 "pyloric dilator")
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070015 "PD")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID:6296329") obo:IAO_0000115 obo:CL_4070015 "A motor neuron that controls the cardiopyloric valve")
AnnotationAssertion(terms:contributor obo:CL_4070015 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070015 obo:CL_0000100)
SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6657))
SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070016 (anterior burster)

AnnotationAssertion(rdfs:label obo:CL_4070016 "anterior burster")
stevevanhooser marked this conversation as resolved.
Show resolved Hide resolved
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070016 "AB")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID:6296329") obo:IAO_0000115 obo:CL_4070016 "Pyloric pacemaker neuron that provides feedback to commissural ganglia (CoG) neurons")
AnnotationAssertion(terms:contributor obo:CL_4070016 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070016 obo:CL_0000099)
SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6657))
SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CL_4070017 (lateral pyloric motor neuron)

AnnotationAssertion(rdfs:label obo:CL_4070017 "lateral pyloric motor neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070017 "LP")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID:6296329") obo:IAO_0000115 obo:CL_4070017 "A motor neuron that controls pyloric filter movements")
AnnotationAssertion(terms:contributor obo:CL_4070017 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070017 obo:CL_0000100)
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6657))
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:RO_0002175 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON:8910001))

# Class: obo:CP_0000000 (obsolete CP:0000000)

AnnotationAssertion(obo:IAO_0100001 obo:CP_0000000 obo:CL_0017500)
Expand Down Expand Up @@ -33586,4 +33690,4 @@ SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000
SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945)) obo:CL_0000164)
SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264)) obo:CL_0000164)
SubClassOf(Annotation(oboInOwl:hasDbXref <https://github.com/obophenotype/cell-ontology/issues/757>) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031))
)
)
Loading