Stomatogastric ganglion cell types of crabs, lobsters

[stevevanhooser]

With @andreagaede, added 8 cell types from the stomatogastric ganglion of crabs and lobsters (thought to be homologous neurons).

It references a relatively new UBERON node: UBERON:8910001 ! stomatogastric ganglion

It views well in Protoge

[stevevanhooser]

Not sure which reviewer to request (apparently I cannot suggest one), but we discussed these changes with @gouttegd and @rays22 at the November meeting.

[gouttegd]

Please see the inline comments below. I only commented on the first new term, but the comments apply, mutatis mutandis, to all the proposed new terms.

It is especially important to fix the incorrect use of EquivalentClasses and of the in taxon relationship.

[stevevanhooser]

Fixes made, looks good to me in Protege, this note from @gouttegd remains relevant:

Side note (more intended for other reviewers): UBERON:8910001 has only been added to Uberon last month, and there has been no new Uberon release since then. We will need to wait for a Uberon release and then refresh the imports.

[gouttegd]

Thank you for your reactivity, much appreciated!

Out of the following comments, the critical one is the one about the duplicated definitions of CL:4070014 and CL:4070017.

With the other comments, we are entering into “nitpicking“ territory, which is good as it means that the most important issues have been addressed.

[stevevanhooser]

Thanks also for your quick responses. Updated

[gouttegd]

This looks good to me.

As previously noted though, we’ll need to wait for UBERON:8910001 to become available in the next Uberon release.

[stevevanhooser]

Thanks for your help @gouttegd!

Are these releases at regular intervals or just as the developers are ready?

Thanks again
Steve

[gouttegd]

We try to make one release every 6 to 8 weeks. The last Uberon release was in late November, so I’d expect the next one to happen before the end of the month. No promises, though.

[aleixpuigb]

This looks good to me.

As previously noted though, we’ll need to wait for UBERON:8910001 to become available in the next Uberon release.

I can run an Uberon release soon (early next week to give enough time to close PRs). I will make the announcement.