Update trimgalore module for save_unpaired fix #221
8 tests run, 2 passed, 0 skipped, 6 failed.
Annotations
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test single end read with UMI
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-bbd946b0368a13d916ce6157f6e53540.nf` [condescending_mcnulty] DSL2 - revision: 9c456cb38e
Downloading plugin [email protected]
Downloading plugin [email protected]
[cb/3f62b7] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[70/807844] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:UMITOOLS_EXTRACT (test)
[42/9172b4] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read with UMI
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-d744eae4ae456f150398de762d58c4fb.nf` [astonishing_lattes] DSL2 - revision: e13d515e1d
[23/984962] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:UMITOOLS_EXTRACT (test)
[61/d0c7d5] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[d5/ffdc01] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read without UMI
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-2d0d0ea85a2ae2eea156d7d4069d080e.nf` [amazing_wilson] DSL2 - revision: a98c06ccad
[57/50ae21] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
[b5/471e26] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test single end read with UMI - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-f97b99a27988d57b38138bde037cbb4f.nf` [amazing_swanson] DSL2 - revision: 9c456cb38e
[31/b55914] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:UMITOOLS_EXTRACT (test)
[c8/51aab2] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[64/afe9bd] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read with UMI - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-b849c0b7d4977172c30eb4ac74c762c.nf` [cranky_cuvier] DSL2 - revision: e13d515e1d
[6b/37b452] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[77/0edce2] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:UMITOOLS_EXTRACT (test)
[a1/d87d45] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read without UMI - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-357ffc3a2b6e2e504385e45aba369382.nf` [desperate_marconi] DSL2 - revision: a98c06ccad
[53/bad15c] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
[f0/0647fd] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it