Update trimgalore module for save_unpaired fix #221
8 tests run, 2 passed, 0 skipped, 6 failed.
Annotations
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test single end read with UMI
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-bbd946b0368a13d916ce6157f6e53540.nf` [sharp_coulomb] DSL2 - revision: 9c456cb38e
Downloading plugin [email protected]
Downloading plugin [email protected]
[3e/a5a604] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:UMITOOLS_EXTRACT (test)
[61/c2fc8f] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[62/10ab3a] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read with UMI
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-d744eae4ae456f150398de762d58c4fb.nf` [compassionate_bose] DSL2 - revision: e13d515e1d
[af/cfa06f] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:UMITOOLS_EXTRACT (test)
[11/074596] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[56/686491] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read without UMI
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-2d0d0ea85a2ae2eea156d7d4069d080e.nf` [adoring_knuth] DSL2 - revision: a98c06ccad
[a1/1484ed] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[d2/7ea214] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test single end read with UMI - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-f97b99a27988d57b38138bde037cbb4f.nf` [jovial_becquerel] DSL2 - revision: 9c456cb38e
[42/92d9ca] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[50/ae3bec] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:UMITOOLS_EXTRACT (test)
[8c/7940e6] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read with UMI - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-b849c0b7d4977172c30eb4ac74c762c.nf` [nauseous_angela] DSL2 - revision: e13d515e1d
[07/16c55e] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:UMITOOLS_EXTRACT (test)
[9a/a3a310] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
[e2/ed19d8] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE
github-actions / JUnit Test Report
Test Subworkflow FASTQ_FASTQC_UMITOOLS_TRIMGALORE.test paired end read without UMI - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-357ffc3a2b6e2e504385e45aba369382.nf` [intergalactic_fermi] DSL2 - revision: a98c06ccad
[cd/8bc0ad] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE (test)
[dd/14166e] Submitted process > FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (test)
Nextflow stderr: