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v0.19.0

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@epi2melabs-bot epi2melabs-bot released this 29 Nov 10:40
· 8 commits to master since this release

Added

  • Regions can now be provided in a three (or more) column BED file to bamstats to calculate per-region statistics.

Fixed

  • A segmentation fault whilst writing statistics files when demultiplexing is enabled.
  • A memory leak occurring in bamstats when qcfail reads are encountered in the input.

Changed

  • Retrieve mean quality score 'qs' tag from BAM record, rather than recomputing. Previous behaviour can be restored with the --recalc_qual option.
  • Get basecall model version id from model_version_id in FASTQ header (in addition to basecaller_model_version_id)
  • Parse required bam tags in one pass rather than piecemeal as required.