Bug fix: Bump several Python packages for Ubuntu CI container builds after Python 3.11.7 update

[climbfuji]

Summary

This PR bumps the versions of several Python packages in the jedi-ci.yaml container specs to match the versions in the unified environment ("on prem" builds) after the update to Python 3.11.7.

Testing

• CI (via workflow_dispatch):
  • clang-mpich: https://github.com/JCSDA/spack-stack/actions/runs/10559248560/job/29250297220?pr=1275 (build worked, but sending slack notification failed because the docker image scrubber ran while the container was built)
  • gcc-openmpi: https://github.com/JCSDA/spack-stack/actions/runs/10562793329/job/29261532771 failed with the same [email protected] compile error than the clang-mpich container previously (not surprising, given that gfortran is the same version 9.4.0 and both the clang and the gcc build use gfortran).
    rerun with flags applied: https://github.com/JCSDA/spack-stack/actions/runs/10565978578/job/29271684593 PASSED
  • intel-impi: https://github.com/JCSDA/spack-stack/actions/runs/10568699393/job/29280153982 RUNNING

Applications affected

JEDI CI

Systems affected

JEDI CI container builds on Ubuntu

Dependencies

n/a

Issue(s) addressed

Resolves failing CI container builds after [email protected] update, see https://github.com/JCSDA/spack-stack/actions/runs/10556032899/job/29240770451

Checklist

• This PR addresses one issue/problem/enhancement, or has a very good reason for not doing so.
• These changes have been tested on the affected systems and applications.
• All dependency PRs/issues have been resolved and this PR can be merged.

[climbfuji]

@eap FYI gcc-openmpi: https://github.com/JCSDA/spack-stack/actions/runs/10562793329/job/29261532771 failed with the same [email protected] compile error than the clang-mpich container previously (not surprising, given that gfortran is the same version 9.4.0 and both the clang and the gcc build use gfortran).

[climbfuji]

Superseded by #1239