Remove trailing whitespace, fixed intendation and fix tests

EBIvariation · Apr 6, 2018 · 4a5c3b0 · 4a5c3b0
1 parent ee956f7
commit 4a5c3b0
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Showing 2 changed files with 40 additions and 40 deletions.
diff --git a/src/vcf/validate_optional_policy.cpp b/src/vcf/validate_optional_policy.cpp
@@ -175,7 +175,7 @@ namespace ebi
             util::string_split(it->second, ",", values);
             if (values.size() != record.alternate_alleles.size()) {
                 throw new InfoBodyError{state.n_lines,
-                        "INFO SVLEN should have same number of values as ALT ", "Expected " + std::to_string(record.alternate_alleles.size())
+                        "INFO SVLEN should have same number of values as ALT", "Expected " + std::to_string(record.alternate_alleles.size())
                         + ", found " + std::to_string(values.size())};
             }
         }

diff --git a/test/vcf/optional_policy_test.cpp b/test/vcf/optional_policy_test.cpp
@@ -138,47 +138,47 @@ namespace ebi
 
         SECTION("SVLEN test")
         {
-                source->meta_entries.emplace(vcf::INFO,
-                    vcf::MetaEntry{
-                        1,
-                        vcf::INFO,
-                        {
-                            { vcf::ID, vcf::SVLEN },
-                            { vcf::NUMBER, "2" },
-                            { vcf::TYPE, vcf::INTEGER },
-                            { vcf::DESCRIPTION, "Difference in length between REF and ALT alleles" }
-                        },
-                        source
-                });
+            source->meta_entries.emplace(vcf::INFO,
+                vcf::MetaEntry{
+                    1,
+                    vcf::INFO,
+                    {
+                        { vcf::ID, vcf::SVLEN },
+                        { vcf::NUMBER, "2" },
+                        { vcf::TYPE, vcf::INTEGER },
+                        { vcf::DESCRIPTION, "Difference in length between REF and ALT alleles" }
+                    },
+                    source
+            });
 
-                CHECK_NOTHROW( (optional_policy.optional_check_body_entry(parsing_state, vcf::Record{
-                                    1,
-                                    "chr1",
-                                    123456,
-                                    { "id123" },
-                                    "A",
-                                    { "AC","AT" },
-                                    1.0,
-                                    { vcf::PASS },
-                                    { { vcf::SVLEN, "1,2" } },
-                                    { vcf::GT },
-                                    { "1|0" },
-                                    source})) );
+            CHECK_NOTHROW( (optional_policy.optional_check_body_entry(parsing_state, vcf::Record{
+                                1,
+                                "chr1",
+                                123456,
+                                { "id123" },
+                                "A",
+                                { "AC", "ACT" },
+                                1.0,
+                                { vcf::PASS },
+                                { { vcf::SVLEN, "1,2" } },
+                                { vcf::GT },
+                                { "1|0" },
+                                source})) );
 
-                CHECK_THROWS_AS( (optional_policy.optional_check_body_entry(parsing_state, vcf::Record{
-                                    1,
-                                    "chr1",
-                                    123456,
-                                    { "id123" },
-                                    "A",
-                                    { "AC" },
-                                    1.0,
-                                    { vcf::PASS },
-                                    { { vcf::SVLEN, "1,2" } },
-                                    { vcf::GT },
-                                    { "0|1" },
-                                    source})),
-                                vcf::InfoBodyError*);
+            CHECK_THROWS_AS( (optional_policy.optional_check_body_entry(parsing_state, vcf::Record{
+                                1,
+                                "chr1",
+                                123456,
+                                { "id123" },
+                                "A",
+                                { "AC" },
+                                1.0,
+                                { vcf::PASS },
+                                { { vcf::SVLEN, "1,2" } },
+                                { vcf::GT },
+                                { "0|1" },
+                                source})),
+                            vcf::InfoBodyError*);
         }
     }