Added test cases for svlen

EBIvariation · Apr 6, 2018 · ee956f7 · ee956f7
1 parent 1530019
commit ee956f7
Showing 1 changed file with 45 additions and 0 deletions.
diff --git a/test/vcf/optional_policy_test.cpp b/test/vcf/optional_policy_test.cpp
@@ -135,6 +135,51 @@ namespace ebi
                                 vcf::InfoBodyError*);
             }
         }
+
+        SECTION("SVLEN test")
+        {
+                source->meta_entries.emplace(vcf::INFO,
+                    vcf::MetaEntry{
+                        1,
+                        vcf::INFO,
+                        {
+                            { vcf::ID, vcf::SVLEN },
+                            { vcf::NUMBER, "2" },
+                            { vcf::TYPE, vcf::INTEGER },
+                            { vcf::DESCRIPTION, "Difference in length between REF and ALT alleles" }
+                        },
+                        source
+                });
+
+                CHECK_NOTHROW( (optional_policy.optional_check_body_entry(parsing_state, vcf::Record{
+                                    1,
+                                    "chr1",
+                                    123456,
+                                    { "id123" },
+                                    "A",
+                                    { "AC","AT" },
+                                    1.0,
+                                    { vcf::PASS },
+                                    { { vcf::SVLEN, "1,2" } },
+                                    { vcf::GT },
+                                    { "1|0" },
+                                    source})) );
+
+                CHECK_THROWS_AS( (optional_policy.optional_check_body_entry(parsing_state, vcf::Record{
+                                    1,
+                                    "chr1",
+                                    123456,
+                                    { "id123" },
+                                    "A",
+                                    { "AC" },
+                                    1.0,
+                                    { vcf::PASS },
+                                    { { vcf::SVLEN, "1,2" } },
+                                    { vcf::GT },
+                                    { "0|1" },
+                                    source})),
+                                vcf::InfoBodyError*);
+        }
     }
 
     TEST_CASE("Alternate allele warnings", "[body alt warnings]")