Updated trusted tools (2024-08-30)

usegalaxy-eu · Aug 30, 2024 · 87495e6 · 87495e6
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diff --git a/asaim.yaml.lock b/asaim.yaml.lock
@@ -18,6 +18,7 @@ tools:
   - 734abc7ac21d
   - 751a694ec620
   - 83c7d564b128
+  - 8848455c0270
   - aad3885b3216
   - b723c120161a
   - ba931a59dd59

diff --git a/bgruening.yaml.lock b/bgruening.yaml.lock
@@ -149,6 +149,7 @@ tools:
   - 1ce9b1d72ec3
   - 276f5d8712d5
   - 291923e6f276
+  - 3e4f8642c77e
   - 3ee0ef312022
   - 8d4f03b5fe9d
   - cb8dfd28c16f
@@ -211,6 +212,7 @@ tools:
   owner: bgruening
   revisions:
   - 8c99976de71e
+  - a34826ae0a73
   - b61022e1b807
   tool_panel_section_label: Assembly
 - name: split_file_to_collection
@@ -258,6 +260,7 @@ tools:
   - 56f9a6e0fe80
   - 878c27dfea9d
   - b1260bca5fdc
+  - b55199c56abd
   - c017111e976a
   - dc3fe98e7b37
   tool_panel_section_label: Graph/Display Data

diff --git a/europe-custom.yaml.lock b/europe-custom.yaml.lock
@@ -145,6 +145,7 @@ tools:
   - 734abc7ac21d
   - 751a694ec620
   - 83c7d564b128
+  - 8848455c0270
   - aad3885b3216
   - b723c120161a
   - ba931a59dd59
@@ -617,6 +618,7 @@ tools:
   - 19237efe98d1
   - 3f0dd362b755
   - 57e5d9382f36
+  - 7ce0fe11b411
   - 9dd5373f6a5a
   - d20e391eb22f
   - e7242484929c
@@ -625,6 +627,7 @@ tools:
 - name: meme_fimo
   owner: iuc
   revisions:
+  - 01f5d04846c4
   - 0c5239d1aa65
   - 40b8472e91ca
   - c1a9a297ba8b
@@ -1148,6 +1151,7 @@ tools:
   - 0a563fd2f22e
   - 318b2a9d54dd
   - 3ea5a2a63fa2
+  - 4014de1b6daf
   - 4074fc1940e2
   - 41929aa1e7f3
   - 44959aa06aeb

diff --git a/tools_iuc.yaml.lock b/tools_iuc.yaml.lock
@@ -1164,6 +1164,7 @@ tools:
 - name: rnaquast
   owner: iuc
   revisions:
+  - 3125faf00ffd
   - 33c060ec0ac9
   - 8e66f695d859
   - 96f74538896e
@@ -1848,6 +1849,7 @@ tools:
   owner: iuc
   revisions:
   - 04d05400d3a6
+  - 40874f772ea1
   tool_panel_section_label: FASTA/FASTQ
 - name: art
   owner: iuc
@@ -1862,6 +1864,7 @@ tools:
   - 1c427e24fb79
   - 204a131e47db
   - 425dab0e057b
+  - 7beb76ffbc0f
   - a9c9d768b751
   - bf0cb5dd02f2
   - d1f62024a08b
@@ -1874,11 +1877,13 @@ tools:
   - 6d084528a6f1
   - 82ced0e47b9d
   - c05232655d00
+  - cab19c0452c4
   - fc029a9b4d07
   tool_panel_section_label: FASTA/FASTQ
 - name: bbtools_tadpole
   owner: iuc
   revisions:
+  - 0ddf147d1897
   - 20aef74d20a1
   - 654c9da47f74
   - cbc75076778f
@@ -2801,6 +2806,7 @@ tools:
   - 734abc7ac21d
   - 751a694ec620
   - 83c7d564b128
+  - 8848455c0270
   - aad3885b3216
   - b723c120161a
   - ba931a59dd59
@@ -3805,6 +3811,7 @@ tools:
   revisions:
   - 3171f7f52576
   - 3f94a2e3d513
+  - 456d8ebb6a28
   - 517464809c33
   - 6d44c9f1a42b
   - 7f19559b8b55
@@ -3955,6 +3962,7 @@ tools:
   - 0a563fd2f22e
   - 318b2a9d54dd
   - 3ea5a2a63fa2
+  - 4014de1b6daf
   - 4074fc1940e2
   - 41929aa1e7f3
   - 44959aa06aeb
@@ -3982,6 +3990,7 @@ tools:
   - 1cd2511a396e
   - 3a1253ee137b
   - 42ce70172b72
+  - 45795f582ae9
   - 58b278def57e
   - 5ef7ec16b04f
   - 61cb2042581a
@@ -4017,16 +4026,34 @@ tools:
   owner: iuc
   revisions:
   - afc795d10918
+  - f801b844f239
   tool_panel_section_label: Metagenomic Analysis
 - name: cami_amber_add
   owner: iuc
   revisions:
+  - 433fb72344cb
   - b07cfe3b877e
   tool_panel_section_label: Metagenomic Analysis
 - name: cami_amber_convert
   owner: iuc
   revisions:
   - 8754ed6f0096
+  - 8f0e53330d8e
+  tool_panel_section_label: Metagenomic Analysis
+- name: name2taxid
+  owner: iuc
+  revisions:
+  - 99ef57d30bfc
+  tool_panel_section_label: Metagenomic Analysis
+- name: gtdb_to_taxdump
+  owner: iuc
+  revisions:
+  - '102852801457'
+  tool_panel_section_label: Metagenomic Analysis
+- name: biobox_add_taxid
+  owner: iuc
+  revisions:
+  - 1e10251b9615
   tool_panel_section_label: Metagenomic Analysis
 - name: krakentools_kreport2krona
   owner: iuc
@@ -4085,6 +4112,7 @@ tools:
   revisions:
   - 03bc6f6e667b
   - 21b85417e4c3
+  - 289d6299bd2e
   - 52fbe4eb7ce7
   - 61acf8a76396
   - 6b8580e02e99
@@ -4095,13 +4123,15 @@ tools:
   - 0c069fc2471c
   - 6eae290d762b
   - 874b1a4fe7f0
+  - b3c5560ffac6
   - b4c6f8741989
   - de03693b75b1
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_core
   owner: iuc
   revisions:
   - 0d30cb9b14cc
+  - 2bbf288d6334
   - 7f712eb18230
   - 943c2ae9594a
   - de6156c8ef16
@@ -4110,6 +4140,7 @@ tools:
 - name: ampvis2_export_fasta
   owner: iuc
   revisions:
+  - 0cce683798d3
   - 0ddd34d51029
   - 45ea720bba74
   - 7c3fea31765c
@@ -4123,6 +4154,7 @@ tools:
   - ac9564dcdb99
   - b8ecbc50af78
   - cdba4eab5a54
+  - f309f1ef68f3
   - ff9bc9357c89
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_heatmap
@@ -4132,12 +4164,14 @@ tools:
   - 14695ae019be
   - 1979fdd0914f
   - 1adde216bdce
+  - 9bdb74297b3d
   - a2d4da20749a
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_load
   owner: iuc
   revisions:
   - 3481feabc54e
+  - 576dd33588bf
   - 8d77d277996e
   - 91efbd7b52dc
   - 932d7573a561
@@ -4147,6 +4181,7 @@ tools:
   owner: iuc
   revisions:
   - 028ba7c0b400
+  - 2f9731cc4c87
   - 49b97737747d
   - 78ff575ef835
   - a14326f1e7df
@@ -4156,6 +4191,7 @@ tools:
   owner: iuc
   revisions:
   - 0e10df6f37c6
+  - 1f6f3bc6edd1
   - 63ed7a3cd45f
   - 74ee43d45476
   - 9bb9bf720e68
@@ -4166,6 +4202,7 @@ tools:
   revisions:
   - 4289db874e3c
   - 7b81221e7925
+  - a0a792d4efae
   - a194e5f09106
   - b7d443cda103
   - ffbccf6fe7fb
@@ -4175,6 +4212,7 @@ tools:
   revisions:
   - 46a85469c104
   - 75e025c9bc10
+  - 7c675dae82eb
   - 811df76f4f26
   - 8569e8d8b712
   - be1918c80d9f
@@ -4183,6 +4221,7 @@ tools:
   owner: iuc
   revisions:
   - 354d645455cd
+  - 454bfdfa6de5
   - 47aec96764b8
   - 7e6f33f40312
   - b8f0ee2915d1
@@ -4191,6 +4230,7 @@ tools:
 - name: ampvis2_rankabundance
   owner: iuc
   revisions:
+  - 18de61c5527c
   - 28b63a7e22ca
   - 2c21c267391c
   - d02f4a87eb55
@@ -4204,6 +4244,7 @@ tools:
   - 37c1c0ba406c
   - aeca454c398e
   - cad82070c2df
+  - cfa509a60770
   - febf16487e02
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_setmetadata
@@ -4213,6 +4254,7 @@ tools:
   - 0d18b4bb08cb
   - 20a46ce12854
   - b8fd62239d7e
+  - cfd7bafb820f
   - e7afc79b841e
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_subset_samples
@@ -4223,6 +4265,7 @@ tools:
   - 317728cb0f8a
   - 543c11bd472a
   - c8bfb923d7d4
+  - f9fa155c191f
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_subset_taxa
   owner: iuc
@@ -4231,6 +4274,7 @@ tools:
   - 512e102a19ad
   - 70a98af91147
   - adf75bf963f7
+  - cf579d6919e8
   - e2df49914652
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_timeseries
@@ -4241,6 +4285,7 @@ tools:
   - 77d2f88d8716
   - 9de032723f5b
   - ceda8519e440
+  - f41dad652845
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_venn
   owner: iuc
@@ -4250,6 +4295,7 @@ tools:
   - 62c6d4c55190
   - 6acf30f0d9fa
   - b966b12ffe36
+  - bbb4a531d80b
   tool_panel_section_label: Metagenomic Analysis
 - name: ancombc
   owner: iuc
@@ -7012,6 +7058,7 @@ tools:
 - name: meme_fimo
   owner: iuc
   revisions:
+  - 01f5d04846c4
   - 0c5239d1aa65
   - 40b8472e91ca
   - 4eb02864e5df
@@ -7026,6 +7073,7 @@ tools:
   - 19237efe98d1
   - 3f0dd362b755
   - 57e5d9382f36
+  - 7ce0fe11b411
   - 9dd5373f6a5a
   - d20e391eb22f
   - e7242484929c
@@ -7035,6 +7083,7 @@ tools:
   owner: iuc
   revisions:
   - 164067a66a5c
+  - 47e7ae719765
   - 5f95d385a33c
   - 793225b11202
   - a0fa4efeeee3
@@ -7178,6 +7227,7 @@ tools:
   - 1c427e24fb79
   - 204a131e47db
   - 425dab0e057b
+  - 7beb76ffbc0f
   - a9c9d768b751
   - bf0cb5dd02f2
   - d1f62024a08b
@@ -8845,6 +8895,7 @@ tools:
 - name: rnaquast
   owner: iuc
   revisions:
+  - 3125faf00ffd
   - 33c060ec0ac9
   - 8e66f695d859
   - 96f74538896e
@@ -9492,6 +9543,7 @@ tools:
   owner: iuc
   revisions:
   - 0dbf49c414ae
+  - 2dce91e11ca7
   - 5826298f6a73
   - 6be888be75f9
   - b01db2684fa5
@@ -10025,6 +10077,7 @@ tools:
   owner: iuc
   revisions:
   - be7c0c692879
+  - ddbace8f3277
   tool_panel_section_label: Single-cell
 - name: best_regression_subsets
   owner: devteam
@@ -10352,6 +10405,7 @@ tools:
   owner: iuc
   revisions:
   - 66b138a2e74c
+  - 7e041c120b96
   - 8eace8923202
   - adec76ebc868
   - b955346ef41e
@@ -11833,6 +11887,7 @@ tools:
   owner: iuc
   revisions:
   - 927e55d1aa97
+  - b5411b5e8259
   tool_panel_section_label: Virology
 - name: data_manager_build_kraken2_database
   owner: iuc