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change the HOME for tabpfn
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bgruening authored Jan 21, 2025
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6 changes: 6 additions & 0 deletions files/galaxy/tpv/tools.yml
Original file line number Diff line number Diff line change
Expand Up @@ -42,6 +42,12 @@ tools:

toolshed.g2.bx.psu.edu/repos/bgruening/tabpfn/tabpfn/.*:
inherits: basic_gpu_resource_param_tool
# This tool is using git to get a huggingface model, it seems that git is easily getting into a locked state on NFS.
# Here we reset the HOME dir in Galaxy to a non-NFS directory. It is true that now multiple tabpfn jobs are updating/cloning into a global directory,
# but since its git, it should work and even be faster for jobs that already find a model. This is not vrey reproducible as the model can change, but this is
# also true if the tool runs on NFS.
env:
HOME: /tmp

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_.*/deeptools_.*/.*:
rules:
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