Jenkins install build 1576.

usegalaxy-au · Aug 8, 2024 · 9f5d4fd · 9f5d4fd
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7545,3 +7545,8 @@ Update	204	07/08/24 15:22:45	uniprot_rest_interface	False	Tests failed	bgruening
 Update	204	07/08/24 15:32:54	yahs	False	Tests failed	iuc	ff4031bfaa22	ff4031bfaa22	Staging Testing	6/7		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_204/install_log.txt
 Install	1571	08/08/24 13:52:55	jbrowse2	True	Tests failed	fubar	878c27dfea9d	878c27dfea9d	Staging Testing	0/8		Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1571/install_log.txt
 Install	1573	08/08/24 15:06:09	jbrowse2	True	Installed	fubar	878c27dfea9d	878c27dfea9d				Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1573/install_log.txt
+Install	1576	08/08/24 17:14:30	mdanalysis_dihedral	True	Installed	chemteam	976cfd44b921	latest		2/2		ChemicalToolBox	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1576/install_log.txt
+Install	1576	08/08/24 17:29:48	pyprophet_export	True	Tests failed	galaxyp	3cf580bf28e2	latest	Staging Testing	1/3		Proteomics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1576/install_log.txt
+Install	1576	08/08/24 17:47:58	riassigner	True	Installed	recetox	af25aa61c611	latest		1/1		Metabolomics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1576/install_log.txt
+Install	1576	08/08/24 18:10:59	rnaquast	True	Tests failed	iuc	8e66f695d859	latest	Staging Testing	5/8		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1576/install_log.txt
+Install	1576	08/08/24 18:17:14	simsearch	True	Installed	bgruening	425469deb136	latest		1/1		ChemicalToolBox	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1576/install_log.txt
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 4efdca267d51
+  - 78c75f134c16
   - 3f3e247c053d
   - 6e9aea89e388
+  - 4efdca267d51
   - c2ef298da409
-  - 78c75f134c16
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -40,55 +40,55 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 3e1f6f6d557e
   - fe3ca740a485
+  - cd2480f35935
+  - 1aae04680c4b
   - 4f2967b27e67
+  - 3e1f6f6d557e
+  - a79ee60b6926
   - f29602ae449e
   - b5d8e5475247
-  - 1aae04680c4b
   - 44018dd6b447
-  - cd2480f35935
-  - a79ee60b6926
   - 133f36c29579
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
-  - 6519ebe25019
   - 7be22100e5e1
   - dc027fa56d55
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
   - ca6d970d931c
-  - 09855551d713
   - 28433faa6e42
+  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
+  - da5f1924bb2e
   - 728dacaf08a9
   - 92eee5f31117
-  - da5f1924bb2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
+  - fe48aa4ccd5e
   - 8fd427007e93
   - 7355bbf5e05f
-  - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -100,24 +100,24 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
   owner: bgruening
   revisions:
   - 7ccc6234b54e
-  - 1ac12c0cc7a0
   - 8e9e228c54c4
+  - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - d9c3016f7283
-  - 63662ae295d6
   - 9d1fbff733cf
+  - 63662ae295d6
+  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -142,58 +142,58 @@ tools:
   owner: iuc
   revisions:
   - 582fd74dc2a1
-  - 756376aeb1ae
-  - 14f588312c56
   - 3bbe70fef6df
+  - 9c15ca7e764e
   - b6b5cd37f2a2
+  - 14f588312c56
   - 9f2455341fac
-  - 9c15ca7e764e
+  - 756376aeb1ae
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - a230ea445788
-  - 73428a792541
-  - 1691af4a0d17
   - 989f7c061f35
+  - 73428a792541
   - 30fb23d4c31c
+  - a230ea445788
+  - 1691af4a0d17
   - 0ffe5be70caf
   - 8e1ace8f77c6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - e94187d661df
+  - 494f0bb4a993
   - 563a19373357
-  - 5a5ae61da69c
   - 30f08d74024f
   - 57c6718cbfcc
-  - 494f0bb4a993
+  - e94187d661df
+  - 5a5ae61da69c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
   - f77d7b685bb3
-  - 2bba2ff070d9
   - d6c7106b7b2e
-  - f31125bb85ea
-  - 1bc5a03faf2e
+  - 2bba2ff070d9
   - 7abc5f6dd595
+  - 1bc5a03faf2e
+  - f31125bb85ea
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
   - fed64e676186
-  - b3cf4684e9c7
-  - 54961e026fe4
-  - d77fdcca400e
   - d3af38b9c7e1
-  - 520e30695ec3
   - 52af33194019
+  - d77fdcca400e
+  - 520e30695ec3
+  - b3cf4684e9c7
+  - 54961e026fe4
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -205,9 +205,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 07d7991bf205
   - 2aea122fbd25
   - 79261884facd
+  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -219,10 +219,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 602de62d995b
-  - 43798b4caee0
   - ef2ad746b589
+  - 43798b4caee0
   - 8b3e3657034e
+  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -246,8 +246,8 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
@@ -273,25 +273,25 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
-  - 370c210d9541
   - 3c1a01127868
+  - 370c210d9541
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
+  - 033755194fe9
   - e95d52d295d7
-  - c8ac28e8ac44
   - 624606f7c996
-  - 033755194fe9
+  - c8ac28e8ac44
   - b815ec682418
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -322,11 +322,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
+  - d643e3b03500
   - 8a22554cdde2
-  - a17498c603ec
   - bf68eb663bc3
   - eaee459f3d69
-  - d643e3b03500
+  - a17498c603ec
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -358,21 +358,21 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - 8f92c2b26e6d
   - 5b80f544c67f
+  - cfcf33df7fc0
   - 268d162b9c49
   - 5a29ab10dba6
-  - cfcf33df7fc0
-  - 68693743661e
-  - 5c7b70713fb5
   - 9473cd297a76
-  - 8f92c2b26e6d
+  - 5c7b70713fb5
+  - 68693743661e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 2b3e65a4252f
   - 5fab4f81391d
+  - 2b3e65a4252f
   - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -385,8 +385,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - 10b84b577117
   - eb35257d2e29
+  - 10b84b577117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -398,17 +398,17 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
+  - 4839e590cb26
+  - d03af1c7002c
   - 037a11682176
-  - e1a9d6fd258d
-  - ba6f87115e13
   - 37213cf56392
-  - 200c378d85f3
   - ac8250086ac3
-  - 45083d070fb8
   - 809dfc93d593
+  - ba6f87115e13
   - 51dd22484644
-  - d03af1c7002c
-  - 4839e590cb26
+  - e1a9d6fd258d
+  - 200c378d85f3
+  - 45083d070fb8
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel