Jenkins install build 1616.

usegalaxy-au · Sep 18, 2024 · 5112c12 · 5112c12
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7775,3 +7775,7 @@ Install	1610	16/09/24 15:47:01	verkko	True	Tests failed	iuc	cf54dafa0403	cf54daf
 Install	1612	16/09/24 16:57:01	verkko	True	Installed	iuc	cf54dafa0403	cf54dafa0403		2/2		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1612/install_log.txt
 Install	1614	17/09/24 11:35:33	artic_guppyplex	True	Installed	iuc	00e20a06ff1e	00e20a06ff1e		2/2		Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1614/install_log.txt
 Install	1614	17/09/24 11:43:29	artic_minion	True	Tests failed	iuc	468b90c41cde	468b90c41cde	Staging Testing	1/3		Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1614/install_log.txt
+Install	1616	17/09/24 12:17:54	bbtools_bbmap	True	Tests failed	iuc	456d8ebb6a28	latest	Staging Testing	1/3		BB Tools	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1616/install_log.txt
+Install	1616	17/09/24 12:23:56	bbtools_bbmerge	True	Installed	iuc	cab19c0452c4	latest		3/3		BB Tools	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1616/install_log.txt
+Install	1616	18/09/24 03:36:38	bbtools_callvariants	True	Tests failed	iuc	7e041c120b96	latest	Staging Testing	0/3		BB Tools	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1616/install_log.txt
+Install	1616	18/09/24 10:41:37	bbtools_tadpole	True	Installed	iuc	0ddf147d1897	latest		3/3		BB Tools	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1616/install_log.txt
diff --git a/requests/bbtools.yml b/requests/bbtools.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,18 +2,18 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 3f3e247c053d
-  - c2ef298da409
-  - 78c75f134c16
-  - 6e9aea89e388
   - 4efdca267d51
+  - 6e9aea89e388
+  - 78c75f134c16
+  - c2ef298da409
+  - 3f3e247c053d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - 3f438bf5475d
   - c45c9dd066e2
+  - 3f438bf5475d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
@@ -26,8 +26,8 @@ tools:
 - name: aegean_locuspocus
   owner: iuc
   revisions:
-  - c4ac24510b55
   - 1fdc517743e6
+  - c4ac24510b55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_parseval
@@ -40,16 +40,16 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - fe3ca740a485
-  - cd2480f35935
-  - 44018dd6b447
-  - a79ee60b6926
   - f29602ae449e
   - 133f36c29579
-  - b5d8e5475247
   - 1aae04680c4b
+  - cd2480f35935
+  - 44018dd6b447
+  - b5d8e5475247
+  - a79ee60b6926
   - 4f2967b27e67
   - 3e1f6f6d557e
+  - fe3ca740a485
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -62,26 +62,26 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - 6519ebe25019
-  - 7be22100e5e1
   - dc027fa56d55
+  - 7be22100e5e1
+  - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - ca6d970d931c
-  - 28433faa6e42
   - 09855551d713
+  - 28433faa6e42
+  - ca6d970d931c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
-  - da5f1924bb2e
-  - 728dacaf08a9
   - d77802fe76f7
   - 92eee5f31117
+  - 728dacaf08a9
+  - da5f1924bb2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
@@ -101,8 +101,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: compleasm
@@ -114,17 +114,17 @@ tools:
 - name: cpat
   owner: bgruening
   revisions:
+  - 1ac12c0cc7a0
   - 7ccc6234b54e
   - 8e9e228c54c4
-  - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
+  - 9d1fbff733cf
   - d9c3016f7283
   - 63662ae295d6
-  - 9d1fbff733cf
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -148,61 +148,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 9c15ca7e764e
+  - 14f588312c56
   - 756376aeb1ae
   - 3bbe70fef6df
+  - 9c15ca7e764e
   - b6b5cd37f2a2
-  - 14f588312c56
-  - 582fd74dc2a1
   - 9f2455341fac
+  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 8e1ace8f77c6
   - 0ffe5be70caf
   - 30fb23d4c31c
+  - 73428a792541
+  - a230ea445788
+  - 8e1ace8f77c6
   - 989f7c061f35
   - 1691af4a0d17
-  - a230ea445788
-  - 73428a792541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 563a19373357
-  - 57c6718cbfcc
   - 494f0bb4a993
-  - 30f08d74024f
+  - 0418d28136de
   - 5a5ae61da69c
+  - 30f08d74024f
   - e94187d661df
-  - 0418d28136de
+  - 57c6718cbfcc
+  - 563a19373357
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - f77d7b685bb3
   - 4b96ced19f75
-  - 2bba2ff070d9
-  - 7abc5f6dd595
   - 1bc5a03faf2e
+  - f77d7b685bb3
   - d6c7106b7b2e
+  - 2bba2ff070d9
   - f31125bb85ea
+  - 7abc5f6dd595
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - b3cf4684e9c7
+  - 54961e026fe4
+  - 520e30695ec3
+  - d3af38b9c7e1
   - 52af33194019
   - fed64e676186
   - d77fdcca400e
-  - d3af38b9c7e1
-  - 520e30695ec3
-  - 54961e026fe4
-  - b3cf4684e9c7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -215,8 +215,8 @@ tools:
   owner: iuc
   revisions:
   - 2aea122fbd25
-  - 79261884facd
   - 07d7991bf205
+  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -228,10 +228,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 8b3e3657034e
-  - ef2ad746b589
   - 602de62d995b
   - 43798b4caee0
+  - ef2ad746b589
+  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -255,16 +255,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - c9e29ac5d099
   - 477d829d3250
+  - c9e29ac5d099
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - 74810db257cc
-  - 98cafcbd2578
   - c55643c3d813
+  - 98cafcbd2578
+  - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -297,11 +297,11 @@ tools:
 - name: mitos2
   owner: iuc
   revisions:
+  - e95d52d295d7
   - 624606f7c996
+  - c8ac28e8ac44
   - 033755194fe9
   - b815ec682418
-  - e95d52d295d7
-  - c8ac28e8ac44
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -337,11 +337,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - bf68eb663bc3
-  - a17498c603ec
-  - eaee459f3d69
-  - d643e3b03500
   - 8a22554cdde2
+  - d643e3b03500
+  - eaee459f3d69
+  - a17498c603ec
+  - bf68eb663bc3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -379,14 +379,14 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 5a29ab10dba6
+  - 5c7b70713fb5
   - 268d162b9c49
-  - 9473cd297a76
-  - 5b80f544c67f
-  - cfcf33df7fc0
-  - 8f92c2b26e6d
   - 68693743661e
-  - 5c7b70713fb5
+  - 8f92c2b26e6d
+  - cfcf33df7fc0
+  - 5b80f544c67f
+  - 5a29ab10dba6
+  - 9473cd297a76
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
@@ -420,23 +420,23 @@ tools:
   owner: iuc
   revisions:
   - 37213cf56392
-  - 45083d070fb8
-  - 51dd22484644
-  - ba6f87115e13
-  - ac8250086ac3
   - d03af1c7002c
+  - 037a11682176
+  - ac8250086ac3
+  - 4839e590cb26
   - e1a9d6fd258d
+  - ba6f87115e13
   - 809dfc93d593
+  - 51dd22484644
   - 200c378d85f3
-  - 4839e590cb26
-  - 037a11682176
+  - 45083d070fb8
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm