Jenkins install build 1585.

usegalaxy-au · Aug 28, 2024 · 3f049e8 · 3f049e8
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7717,3 +7717,4 @@ Update	207	28/08/24 13:24:47	sra_tools	False	Installed	iuc	8848455c0270	8848455c
 Update	207	28/08/24 13:29:10	text_processing	False	Installed	bgruening	86755160afbf	86755160afbf		3/3		Text Manipulation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_207/install_log.txt
 Install	1583	28/08/24 15:41:12	pyprophet_export	True	Installed	galaxyp	3cf580bf28e2	latest				Proteomics	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1583/install_log.txt
 Install	1583	28/08/24 15:48:19	rnaquast	True	Installed	iuc	8e66f695d859	latest				Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1583/install_log.txt
+Install	1585	28/08/24 16:33:53	ragtag	True	Tests failed	iuc	b3c3217c0cbc	b3c3217c0cbc	Staging Testing	1/5		Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1585/install_log.txt
diff --git a/requests/RagTag.yml b/requests/RagTag.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,25 +2,25 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 4efdca267d51
   - 78c75f134c16
-  - 6e9aea89e388
   - 3f3e247c053d
+  - 4efdca267d51
   - c2ef298da409
+  - 6e9aea89e388
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - 3f438bf5475d
   - c45c9dd066e2
+  - 3f438bf5475d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
   owner: iuc
   revisions:
-  - 1dd7adc21b6d
   - 8dc7512c9dc9
+  - 1dd7adc21b6d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_locuspocus
@@ -40,55 +40,55 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 133f36c29579
-  - cd2480f35935
-  - a79ee60b6926
   - 3e1f6f6d557e
-  - 44018dd6b447
-  - b5d8e5475247
-  - fe3ca740a485
+  - a79ee60b6926
   - 4f2967b27e67
   - f29602ae449e
+  - fe3ca740a485
   - 1aae04680c4b
+  - b5d8e5475247
+  - cd2480f35935
+  - 133f36c29579
+  - 44018dd6b447
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - bc88856eddab
   - e78e25d3b4bd
+  - bc88856eddab
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
-  - dc027fa56d55
   - 7be22100e5e1
   - 6519ebe25019
+  - dc027fa56d55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - 28433faa6e42
   - 09855551d713
+  - 28433faa6e42
   - ca6d970d931c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
   - 728dacaf08a9
-  - da5f1924bb2e
   - 92eee5f31117
+  - da5f1924bb2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - 7355bbf5e05f
   - 8fd427007e93
   - fe48aa4ccd5e
+  - 7355bbf5e05f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -108,16 +108,16 @@ tools:
   owner: bgruening
   revisions:
   - 7ccc6234b54e
-  - 8e9e228c54c4
   - 1ac12c0cc7a0
+  - 8e9e228c54c4
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
   - 9d1fbff733cf
-  - d9c3016f7283
   - 63662ae295d6
+  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -141,60 +141,60 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
+  - 9f2455341fac
+  - 14f588312c56
   - 3bbe70fef6df
-  - b6b5cd37f2a2
   - 582fd74dc2a1
+  - b6b5cd37f2a2
   - 756376aeb1ae
-  - 14f588312c56
   - 9c15ca7e764e
-  - 9f2455341fac
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 30fb23d4c31c
-  - 8e1ace8f77c6
-  - 1691af4a0d17
   - 989f7c061f35
-  - 73428a792541
   - 0ffe5be70caf
+  - 1691af4a0d17
   - a230ea445788
+  - 8e1ace8f77c6
+  - 30fb23d4c31c
+  - 73428a792541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 30f08d74024f
-  - e94187d661df
-  - 57c6718cbfcc
   - 563a19373357
   - 494f0bb4a993
+  - 57c6718cbfcc
+  - 30f08d74024f
+  - e94187d661df
   - 5a5ae61da69c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 7abc5f6dd595
+  - 4b96ced19f75
+  - d6c7106b7b2e
   - f77d7b685bb3
+  - 7abc5f6dd595
+  - f31125bb85ea
   - 1bc5a03faf2e
   - 2bba2ff070d9
-  - f31125bb85ea
-  - d6c7106b7b2e
-  - 4b96ced19f75
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - 520e30695ec3
+  - d77fdcca400e
   - d3af38b9c7e1
-  - 54961e026fe4
-  - b3cf4684e9c7
   - fed64e676186
   - 52af33194019
-  - d77fdcca400e
-  - 520e30695ec3
+  - 54961e026fe4
+  - b3cf4684e9c7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -206,9 +206,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
+  - 79261884facd
   - 2aea122fbd25
   - 07d7991bf205
-  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -220,10 +220,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
+  - 43798b4caee0
+  - ef2ad746b589
   - 602de62d995b
   - 8b3e3657034e
-  - ef2ad746b589
-  - 43798b4caee0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -247,16 +247,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - 74810db257cc
   - 98cafcbd2578
   - c55643c3d813
+  - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -289,11 +289,11 @@ tools:
 - name: mitos2
   owner: iuc
   revisions:
-  - 033755194fe9
+  - c8ac28e8ac44
   - 624606f7c996
-  - e95d52d295d7
   - b815ec682418
-  - c8ac28e8ac44
+  - e95d52d295d7
+  - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -323,11 +323,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - bf68eb663bc3
+  - d643e3b03500
   - a17498c603ec
-  - eaee459f3d69
   - 8a22554cdde2
-  - d643e3b03500
+  - eaee459f3d69
+  - bf68eb663bc3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -359,21 +359,21 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - cfcf33df7fc0
-  - 268d162b9c49
-  - 5b80f544c67f
-  - 9473cd297a76
-  - 8f92c2b26e6d
   - 68693743661e
+  - 8f92c2b26e6d
   - 5a29ab10dba6
+  - 5b80f544c67f
+  - 9473cd297a76
+  - cfcf33df7fc0
+  - 268d162b9c49
   - 5c7b70713fb5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 5fab4f81391d
   - 09d6806c609e
+  - 5fab4f81391d
   - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -386,8 +386,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - 10b84b577117
   - eb35257d2e29
+  - 10b84b577117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -399,24 +399,24 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
+  - 37213cf56392
+  - 037a11682176
+  - 4839e590cb26
   - e1a9d6fd258d
-  - 809dfc93d593
-  - 45083d070fb8
-  - 51dd22484644
   - 200c378d85f3
-  - d03af1c7002c
+  - 45083d070fb8
   - ac8250086ac3
-  - 37213cf56392
   - ba6f87115e13
-  - 4839e590cb26
-  - 037a11682176
+  - 51dd22484644
+  - 809dfc93d593
+  - d03af1c7002c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm