Jenkins install build 1675.

usegalaxy-au · Oct 15, 2024 · 3678851 · 3678851
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7943,3 +7943,4 @@ Update	213	09/10/24 20:29:28	umi_tools_group	False	Installed	iuc	428735be9764	42
 Update	213	09/10/24 20:35:18	umi_tools_whitelist	False	Installed	iuc	e4e12f0b3af1	e4e12f0b3af1		4/4		FASTA/FASTQ	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_213/install_log.txt
 Install	1671	15/10/24 02:20:57	plot_ragtag_paf	True	Shed-tools error	galaxy-australia		latest	Staging Installation			Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1671/install_log.txt
 Install	1673	15/10/24 02:33:30	plot_ragtag_paf	True	Tests failed	galaxy-australia	94e0834ae4ed	latest	Staging Testing	0/3		Graph/Display Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1673/install_log.txt
+Install	1675	15/10/24 03:11:07	gprofiler_gost	True	Tests failed	iuc	bf39cdd007f5	latest	Staging Testing	0/2		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1675/install_log.txt
diff --git a/requests/[email protected] b/requests/[email protected]
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,18 +2,18 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 6e9aea89e388
-  - 3f3e247c053d
+  - 4efdca267d51
   - c2ef298da409
   - 78c75f134c16
-  - 4efdca267d51
+  - 6e9aea89e388
+  - 3f3e247c053d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - c45c9dd066e2
   - 3f438bf5475d
+  - c45c9dd066e2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
@@ -33,23 +33,23 @@ tools:
 - name: aegean_parseval
   owner: iuc
   revisions:
-  - 1b52f0c8ad7f
   - d6c074a93c51
+  - 1b52f0c8ad7f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 3e1f6f6d557e
   - b5d8e5475247
-  - 133f36c29579
-  - cd2480f35935
   - 44018dd6b447
   - 1aae04680c4b
-  - fe3ca740a485
+  - cd2480f35935
   - a79ee60b6926
-  - 4f2967b27e67
   - f29602ae449e
+  - 3e1f6f6d557e
+  - 133f36c29579
+  - fe3ca740a485
+  - 4f2967b27e67
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -62,36 +62,36 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - dc027fa56d55
+  - 6519ebe25019
   - f1e653756174
   - 7be22100e5e1
-  - 6519ebe25019
+  - dc027fa56d55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - 28433faa6e42
   - ca6d970d931c
-  - bd0e53f3a891
   - 09855551d713
+  - bd0e53f3a891
+  - 28433faa6e42
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
   - 92eee5f31117
   - da5f1924bb2e
-  - 728dacaf08a9
   - d77802fe76f7
+  - 728dacaf08a9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
+  - fe48aa4ccd5e
   - 7355bbf5e05f
   - 8fd427007e93
-  - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -124,9 +124,9 @@ tools:
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - 63662ae295d6
-  - d9c3016f7283
   - 9d1fbff733cf
+  - d9c3016f7283
+  - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -150,61 +150,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 14f588312c56
-  - b6b5cd37f2a2
-  - 9c15ca7e764e
-  - 582fd74dc2a1
   - 756376aeb1ae
   - 3bbe70fef6df
+  - 582fd74dc2a1
+  - b6b5cd37f2a2
+  - 9c15ca7e764e
   - 9f2455341fac
+  - 14f588312c56
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
   - a230ea445788
-  - 8e1ace8f77c6
   - 30fb23d4c31c
   - 989f7c061f35
+  - 73428a792541
+  - 8e1ace8f77c6
   - 0ffe5be70caf
   - 1691af4a0d17
-  - 73428a792541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
+  - 57c6718cbfcc
   - e94187d661df
+  - 0418d28136de
   - 563a19373357
+  - 5a5ae61da69c
   - 494f0bb4a993
-  - 0418d28136de
   - 30f08d74024f
-  - 5a5ae61da69c
-  - 57c6718cbfcc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 7abc5f6dd595
-  - f31125bb85ea
+  - d6c7106b7b2e
+  - 2bba2ff070d9
   - 1bc5a03faf2e
+  - f31125bb85ea
+  - 7abc5f6dd595
   - f77d7b685bb3
-  - 2bba2ff070d9
-  - d6c7106b7b2e
   - 4b96ced19f75
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - d77fdcca400e
-  - 520e30695ec3
-  - d3af38b9c7e1
-  - b3cf4684e9c7
   - 54961e026fe4
-  - 52af33194019
+  - b3cf4684e9c7
+  - d3af38b9c7e1
+  - 520e30695ec3
+  - d77fdcca400e
   - fed64e676186
+  - 52af33194019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -217,8 +217,8 @@ tools:
   owner: iuc
   revisions:
   - 79261884facd
-  - 07d7991bf205
   - 2aea122fbd25
+  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -230,10 +230,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 8b3e3657034e
-  - ef2ad746b589
-  - 43798b4caee0
   - 602de62d995b
+  - 43798b4caee0
+  - ef2ad746b589
+  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -242,6 +242,12 @@ tools:
   - de3e053bd6a5
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
+- name: gprofiler_gost
+  owner: iuc
+  revisions:
+  - bf39cdd007f5
+  tool_panel_section_label: Annotation
+  tool_shed_url: toolshed.g2.bx.psu.edu
 - name: helixer
   owner: genouest
   revisions:
@@ -257,16 +263,16 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
   owner: bgruening
   revisions:
-  - c55643c3d813
-  - 98cafcbd2578
   - 74810db257cc
+  - 98cafcbd2578
+  - c55643c3d813
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -291,18 +297,18 @@ tools:
 - name: maker
   owner: iuc
   revisions:
-  - 370c210d9541
   - 3c1a01127868
   - d46d803ca6cc
+  - 370c210d9541
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - 624606f7c996
   - 033755194fe9
-  - c8ac28e8ac44
+  - 624606f7c996
   - b815ec682418
+  - c8ac28e8ac44
   - e95d52d295d7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -345,11 +351,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
+  - eaee459f3d69
   - 8a22554cdde2
   - d643e3b03500
-  - bf68eb663bc3
-  - eaee459f3d69
   - a17498c603ec
+  - bf68eb663bc3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -361,15 +367,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sanntis_marine
@@ -394,20 +400,20 @@ tools:
   owner: iuc
   revisions:
   - 5a29ab10dba6
-  - cfcf33df7fc0
-  - 268d162b9c49
+  - 6322be79bd8e
+  - 8f92c2b26e6d
   - 5b80f544c67f
   - 5c7b70713fb5
+  - 268d162b9c49
+  - cfcf33df7fc0
   - 68693743661e
-  - 6322be79bd8e
-  - 8f92c2b26e6d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 09d6806c609e
   - 2b3e65a4252f
+  - 09d6806c609e
   - 5fab4f81391d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -420,8 +426,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - eb35257d2e29
   - 10b84b577117
+  - eb35257d2e29
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -433,24 +439,24 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - ac8250086ac3
-  - 37213cf56392
-  - ba6f87115e13
-  - 4839e590cb26
-  - 809dfc93d593
   - 45083d070fb8
   - 037a11682176
-  - e1a9d6fd258d
-  - d03af1c7002c
+  - ac8250086ac3
+  - 809dfc93d593
+  - ba6f87115e13
   - 200c378d85f3
   - 51dd22484644
+  - e1a9d6fd258d
+  - 37213cf56392
+  - 4839e590cb26
+  - d03af1c7002c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - f50807720df1
   - 8fc50fe60127
+  - f50807720df1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm