Jenkins install build 1726.

usegalaxy-au · Jan 23, 2025 · 28bcfa9 · 28bcfa9
1 parent d3bf96c
commit 28bcfa9
Show file tree

Hide file tree

Showing 102 changed files with 3,129 additions and 3,117 deletions.
diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -8280,3 +8280,5 @@ Install	1723	16/01/25 05:57:13	quast	False	Installed	iuc	a3b35edea53a	a3b35edea5
 Update	229	22/01/25 01:22:18	compleasm	False	Tests failed	iuc	7109a27a11db	7109a27a11db	Staging Testing	0/1		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_229/install_log.txt
 Update	229	22/01/25 01:28:01	krakentools_alpha_diversity	False	Tests failed	iuc	78b69342c280	78b69342c280	Staging Testing	3/5		Metagenomic Analysis	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_229/install_log.txt
 Update	229	22/01/25 01:32:08	snippy	False	Installed	iuc	08d22d220254	08d22d220254				Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_229/install_log.txt
+Install	1726	23/01/25 00:26:49	squirrel_phylo	True	Installed	iuc	b64098b87ea0	b64098b87ea0		2/2		Viral Tools	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1726/install_log.txt
+Install	1726	23/01/25 00:34:08	squirrel_qc	True	Installed	iuc	f63d24309f49	f63d24309f49		1/1		Viral Tools	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1726/install_log.txt
diff --git a/requests/squirrels.yml b/requests/squirrels.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -3,17 +3,17 @@ tools:
   owner: iuc
   revisions:
   - 3f3e247c053d
-  - 78c75f134c16
-  - 4efdca267d51
   - 6e9aea89e388
+  - 78c75f134c16
   - c2ef298da409
+  - 4efdca267d51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - c45c9dd066e2
   - 3f438bf5475d
+  - c45c9dd066e2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
@@ -26,74 +26,74 @@ tools:
 - name: aegean_locuspocus
   owner: iuc
   revisions:
-  - 1fdc517743e6
   - c4ac24510b55
+  - 1fdc517743e6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_parseval
   owner: iuc
   revisions:
-  - d6c074a93c51
   - 1b52f0c8ad7f
+  - d6c074a93c51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 44018dd6b447
-  - cd2480f35935
-  - b5d8e5475247
-  - a79ee60b6926
-  - fe3ca740a485
   - 1aae04680c4b
+  - cd2480f35935
   - f29602ae449e
+  - a79ee60b6926
   - 4f2967b27e67
   - 133f36c29579
+  - 44018dd6b447
   - 3e1f6f6d557e
+  - fe3ca740a485
+  - b5d8e5475247
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
   owner: bgruening
   revisions:
-  - aada0deea587
+  - dc027fa56d55
   - 7be22100e5e1
   - f1e653756174
+  - aada0deea587
   - 6519ebe25019
-  - dc027fa56d55
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
   - 0fc0f9cf035a
-  - 09855551d713
   - 28433faa6e42
-  - ca6d970d931c
   - bd0e53f3a891
+  - ca6d970d931c
+  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
+  - d77802fe76f7
+  - da5f1924bb2e
   - 92eee5f31117
   - 728dacaf08a9
-  - da5f1924bb2e
-  - d77802fe76f7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
   - 8fd427007e93
   - 7355bbf5e05f
+  - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -118,17 +118,17 @@ tools:
 - name: cpat
   owner: bgruening
   revisions:
-  - 7ccc6234b54e
   - 1ac12c0cc7a0
   - 8e9e228c54c4
+  - 7ccc6234b54e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
+  - d9c3016f7283
   - 9d1fbff733cf
   - 63662ae295d6
-  - d9c3016f7283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: exonerate
@@ -158,61 +158,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
+  - 756376aeb1ae
   - 9f2455341fac
-  - 582fd74dc2a1
   - b6b5cd37f2a2
-  - 756376aeb1ae
-  - 3bbe70fef6df
-  - 9c15ca7e764e
   - 14f588312c56
+  - 9c15ca7e764e
+  - 582fd74dc2a1
+  - 3bbe70fef6df
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 73428a792541
-  - 30fb23d4c31c
-  - 0ffe5be70caf
-  - 1691af4a0d17
-  - 8e1ace8f77c6
   - 989f7c061f35
+  - 8e1ace8f77c6
+  - 0ffe5be70caf
+  - 30fb23d4c31c
+  - 73428a792541
   - a230ea445788
+  - 1691af4a0d17
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
-  - 563a19373357
-  - 494f0bb4a993
+  - e94187d661df
   - 5a5ae61da69c
+  - 563a19373357
   - 30f08d74024f
-  - 57c6718cbfcc
   - 0418d28136de
-  - e94187d661df
+  - 494f0bb4a993
+  - 57c6718cbfcc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - f77d7b685bb3
-  - 4b96ced19f75
   - 7abc5f6dd595
-  - 1bc5a03faf2e
   - f31125bb85ea
-  - d6c7106b7b2e
   - 2bba2ff070d9
+  - d6c7106b7b2e
+  - f77d7b685bb3
+  - 1bc5a03faf2e
+  - 4b96ced19f75
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - 520e30695ec3
-  - 54961e026fe4
-  - d77fdcca400e
   - d3af38b9c7e1
-  - 52af33194019
-  - b3cf4684e9c7
   - fed64e676186
+  - b3cf4684e9c7
+  - d77fdcca400e
+  - 54961e026fe4
+  - 52af33194019
+  - 520e30695ec3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -224,9 +224,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
-  - 79261884facd
   - 2aea122fbd25
   - 07d7991bf205
+  - 79261884facd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -238,10 +238,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - ef2ad746b589
-  - 8b3e3657034e
   - 602de62d995b
+  - ef2ad746b589
   - 43798b4caee0
+  - 8b3e3657034e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -273,9 +273,9 @@ tools:
 - name: interproscan
   owner: bgruening
   revisions:
-  - c55643c3d813
-  - 98cafcbd2578
   - 74810db257cc
+  - 98cafcbd2578
+  - c55643c3d813
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -293,25 +293,25 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - 326f9c294b09
   - e906fa778440
+  - 326f9c294b09
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - 370c210d9541
   - d46d803ca6cc
+  - 370c210d9541
   - 3c1a01127868
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
   - e95d52d295d7
-  - b815ec682418
   - 033755194fe9
   - c8ac28e8ac44
+  - b815ec682418
   - 624606f7c996
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -354,8 +354,8 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - 8a22554cdde2
   - a17498c603ec
+  - 8a22554cdde2
   - bf68eb663bc3
   - eaee459f3d69
   - d643e3b03500
@@ -370,8 +370,8 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
@@ -402,23 +402,23 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 6322be79bd8e
-  - 5a29ab10dba6
-  - cfcf33df7fc0
   - 5c7b70713fb5
-  - c7275bd8b4d6
-  - 5b80f544c67f
   - 68693743661e
-  - 268d162b9c49
   - 8f92c2b26e6d
+  - 5b80f544c67f
+  - c7275bd8b4d6
+  - 268d162b9c49
+  - 5a29ab10dba6
+  - 6322be79bd8e
+  - cfcf33df7fc0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 5fab4f81391d
-  - 09d6806c609e
   - 2b3e65a4252f
+  - 09d6806c609e
+  - 5fab4f81391d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -430,8 +430,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - 10b84b577117
   - eb35257d2e29
+  - 10b84b577117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -443,18 +443,18 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 200c378d85f3
-  - d03af1c7002c
+  - 037a11682176
+  - 4839e590cb26
+  - ac8250086ac3
   - 45083d070fb8
+  - e1a9d6fd258d
   - 8cb134b8c1a5
-  - ac8250086ac3
-  - 4839e590cb26
+  - ba6f87115e13
+  - 200c378d85f3
+  - 51dd22484644
   - 37213cf56392
-  - 037a11682176
   - 809dfc93d593
-  - 51dd22484644
-  - ba6f87115e13
-  - e1a9d6fd258d
+  - d03af1c7002c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel