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temporarily stop fastqc, trimmomatic from going to pulsar to reduce f…
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…ile transfer load
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cat-bro authored Feb 20, 2024
1 parent 68578d8 commit b785834
Showing 1 changed file with 8 additions and 8 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -541,10 +541,10 @@ tools:
env:
SINGULARITYENV__JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
_JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
scheduling:
accept:
- pulsar
- pulsar-quick
# scheduling: # Temporarily run all jobs on slurm to reduce file transfers to pulsar (20/2/24)
# accept:
# - pulsar
# - pulsar-quick
rules:
- if: |
minimum_singularity_version = '0.72+galaxy1'
Expand Down Expand Up @@ -2874,10 +2874,10 @@ tools:
env:
SINGULARITYENV__JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
_JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
scheduling:
accept:
- pulsar
- pulsar-quick
# scheduling: # Temporarily run all jobs on slurm to reduce file transfers to pulsar (20/2/24)
# accept:
# - pulsar
# - pulsar-quick
rules:
- if: |
minimum_singularity_version = '0.36.6'
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