Docs #2 #1

.gitignore

@@ -1,3 +1,5 @@
+/docs/mockup.docx
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]

README.md

@@ -37,6 +37,9 @@ button in the top-right.
      a new layer with the proper transform applied.
 
    * napari will need to be installed separately for this to work: `pip install napari`
+
+9. For more detailed instructions and more information, open the documentation from inside the
+app.
 
 Numbered steps above correspond to the locations indicated in the screenshot below:
 

docs/led_montage_for_napari.py

@@ -4,23 +4,15 @@
 
 with napari.gui_qt():
 	viewer = napari.Viewer()
-	reference = viewer.add_image(imread('C:/Users/lancon/Documents/GitHub/CIM/docs/images/led_photograph_1.jpg'), name='led_photograph_1.jpg')
+	reference = viewer.add_image(imread('C:/Users/lancon/Documents/GitHub/CIM/docs/example/led_photograph_1.jpg'), name='led_photograph_1.jpg')
 	reference.scale = (1.0, 1.0)
 	reference.rotate = 0.0
 	reference.translate = (0.0, 0.0)
-	moving1 = viewer.add_image(imread('C:/Users/lancon/Documents/GitHub/CIM/docs/images/led_xray_1.jpg'), name='led_xray_1.jpg')
-	moving1.scale = (0.6750556940957996, 0.6750556940957996)
-	moving1.rotate = 0.28827821902320655
-	moving1.translate = (286.84713856699454, 312.03881723676216)
-	moving2 = viewer.add_image(imread('C:/Users/lancon/Documents/GitHub/CIM/docs/images/led_micrograph_1.jpg'), name='led_micrograph_1.jpg')
-	moving2.scale = (0.06702167479992088, 0.06702167479992088)
-	moving2.rotate = -0.8050467017347441
-	moving2.translate = (353.7324550308661, 927.9582324946447)
-	moving3 = viewer.add_image(imread('C:/Users/lancon/Documents/GitHub/CIM/docs/images/led_xray_2.jpg'), name='led_xray_2.jpg')
-	moving3.scale = (0.15568338107189866, 0.15568338107189866)
-	moving3.rotate = 0.3951051917960021
-	moving3.translate = (327.1747386431872, 935.133078025883)
-	moving4 = viewer.add_image(imread('C:/Users/lancon/Documents/GitHub/CIM/docs/images/led_xray_3.jpg'), name='led_xray_3.jpg')
-	moving4.scale = (0.07562171904384082, 0.07562171904384082)
-	moving4.rotate = 0.33719975120085394
-	moving4.translate = (340.1858354002664, 948.8138217715763)
+	moving1 = viewer.add_image(imread('C:/Users/lancon/Documents/GitHub/CIM/docs/example/led_micrograph_1.jpg'), name='led_micrograph_1.jpg')
+	moving1.scale = (0.06620473023384621, 0.06620473023384621)
+	moving1.rotate = -2.667902396758369
+	moving1.translate = (353.113107047931, 930.8959890457373)
+	moving2 = viewer.add_image(imread('C:/Users/lancon/Documents/GitHub/CIM/docs/example/led_xray_2.jpg'), name='led_xray_2.jpg')
+	moving2.scale = (0.15874186598992301, 0.15874186598992301)
+	moving2.rotate = 0.2940480079357866
+	moving2.translate = (325.73990289545736, 933.5170923835777)