v0.2 - refactoring, fixes, and enhancements #516

	name: Python package

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]
	schedule:
	- cron: "0 5 1,15 * *"

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.10", "3.12"]

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install uv
	uv venv
	source .venv/bin/activate
	uv pip install ruff pytest
	uv pip install .[dev,test,atac]
	- name: Install dev dependencies
	run: >
	uv pip install
	git+https://github.com/bioFAM/mofapy2
	git+https://github.com/scverse/mudata
	- name: Ruff check
	run: \|
	source .venv/bin/activate
	ruff check src/muon
	- name: Test with pytest
	run: \|
	source .venv/bin/activate
	python -m pytest

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