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Expand Up @@ -351,7 +351,7 @@ will not work either.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7fb568d1b6a0>
<function explore_slices.<locals>.display_slice at 0x7f53942776a0>



Expand Down Expand Up @@ -473,7 +473,7 @@ slices interactively.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7fb568f2f6a0>
<function explore_slices.<locals>.display_slice at 0x7f539463c040>



Expand Down Expand Up @@ -584,7 +584,7 @@ Note that this works in a static HTML page!

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 10.557 seconds)
**Total running time of the script:** (0 minutes 10.845 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_image_processing.py:
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Expand Up @@ -148,7 +148,7 @@ The `imshow` function can display both grayscale and RGB(A) 2D images.
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [64..4095].
<matplotlib.image.AxesImage object at 0x7f76ff270b00>
<matplotlib.image.AxesImage object at 0x7f4e5d3e1880>
Expand Down Expand Up @@ -285,9 +285,6 @@ Let us be very specific and pass value ranges on a per-channel basis:
.. raw:: html
:file: images/sphx_glr_plot_3d_interaction_004.html

Expand Down Expand Up @@ -375,7 +372,7 @@ The biologist's eye can spot that the two bright blobs (best seen in
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 10.788 seconds)
**Total running time of the script:** (0 minutes 12.974 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_interaction.py:
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Expand Up @@ -238,9 +238,6 @@ typical size for strong variations. We shall use this size as the
.. raw:: html
:file: images/sphx_glr_plot_3d_structure_tensor_003.html

Expand Down Expand Up @@ -349,7 +346,7 @@ where the maximum eigenvalue is found (i.e., ``Z = coords[1]``).
.. raw:: html
:file: images/sphx_glr_plot_3d_structure_tensor_004.html
:file: images/sphx_glr_plot_3d_structure_tensor_003.html



Expand Down Expand Up @@ -460,7 +457,7 @@ maximum eigenvalue is found.
.. raw:: html
:file: images/sphx_glr_plot_3d_structure_tensor_005.html
:file: images/sphx_glr_plot_3d_structure_tensor_004.html



Expand Down Expand Up @@ -490,7 +487,7 @@ tissue), especially in the Y-Z plane (``longitudinal=1``).
.. raw:: html
:file: images/sphx_glr_plot_3d_structure_tensor_006.html
:file: images/sphx_glr_plot_3d_structure_tensor_005.html



Expand Down Expand Up @@ -524,7 +521,7 @@ we would get the pancake situation.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.136 seconds)
**Total running time of the script:** (0 minutes 2.160 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_structure_tensor.py:
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Expand Up @@ -266,6 +266,9 @@ parts of the histogram of gray values.
:srcset: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_007.png
:class: sphx-glr-single-img

.. raw:: html
:file: images/sphx_glr_plot_coins_segmentation_008.html




Expand All @@ -291,9 +294,9 @@ map starting from the markers determined above:
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_008.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_009.png
:alt: segmentation
:srcset: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_008.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_009.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -330,9 +333,9 @@ labeled individually.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_009.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_010.png
:alt: plot coins segmentation
:srcset: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_009.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_coins_segmentation_010.png
:class: sphx-glr-single-img


Expand All @@ -342,7 +345,7 @@ labeled individually.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.153 seconds)
**Total running time of the script:** (0 minutes 1.956 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_coins_segmentation.py:
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Expand Up @@ -177,7 +177,7 @@ much lower than the overlap coefficient.
.. code-block:: none
np.float64(0.2450786076122774)
np.float64(0.34419177880941715)
Expand Down Expand Up @@ -250,6 +250,9 @@ every pixel to see the relationship between them.
:srcset: /auto_examples/applications/images/sphx_glr_plot_colocalization_metrics_003.png
:class: sphx-glr-multi-img

.. raw:: html
:file: images/sphx_glr_plot_colocalization_metrics_004.html


.. rst-class:: sphx-glr-script-out

Expand Down Expand Up @@ -281,7 +284,7 @@ would give us a good measure of how strong the association is.

.. code-block:: none
PCC: 0.872, p-val: 0
PCC: 0.81, p-val: 0
Expand Down Expand Up @@ -309,7 +312,7 @@ case.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.597 seconds)
**Total running time of the script:** (0 minutes 1.569 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_colocalization_metrics.py:
Expand Down
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Expand Up @@ -126,9 +126,6 @@ represented as grayscale.
.. raw:: html
:file: images/sphx_glr_plot_cornea_spot_inpainting_001.html

Expand Down Expand Up @@ -171,9 +168,9 @@ variance.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_001.png
:alt: Image median over time, Image variance over time
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_001.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -247,9 +244,9 @@ it is easier for us to compare them:
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:alt: block_size = 21, block_size = 43
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_002.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -281,9 +278,9 @@ closer to the desired results.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:alt: No offset, Offset = 15
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_003.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -318,9 +315,9 @@ lines, while preserving the shape and size of larger objects.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:alt: mask before, after opening
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_004.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -355,9 +352,9 @@ Next, we can make the detected areas wider by applying a dilation filter:
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:alt: Before, After dilation
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_005.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -464,9 +461,9 @@ parameter).
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_007.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:alt: Segmented spots over restored image
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_007.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_cornea_spot_inpainting_006.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -495,7 +492,7 @@ the opening processing step, when removing fine-grained features.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 29.626 seconds)
**Total running time of the script:** (0 minutes 28.467 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_cornea_spot_inpainting.py:
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Original file line number Diff line number Diff line change
Expand Up @@ -134,7 +134,7 @@ using `OpenCV train cascade utility
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.392 seconds)
**Total running time of the script:** (0 minutes 0.456 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_face_detection.py:
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Original file line number Diff line number Diff line change
Expand Up @@ -119,9 +119,6 @@ The dataset is a 2D image stack with 15 frames (time points) and 2 channels.
.. raw:: html
:file: images/sphx_glr_plot_fluorescence_nuclear_envelope_001.html

Expand Down Expand Up @@ -285,9 +282,9 @@ Let us visualize these processing steps in a sequence of subplots.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_001.png
:alt: a) Raw, b) Blur, c) Threshold, c-1) Fill in, c-2) Keep one nucleus, d) Dilate, e) Erode, f) Nucleus Rim
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_001.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -324,9 +321,9 @@ it as a mask to measure the intensity in the second channel.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:alt: Second channel (raw), Selection
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -597,9 +594,9 @@ regions.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:alt: Change in fluorescence intensity at the nuclear envelope
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:class: sphx-glr-single-img


Expand All @@ -615,7 +612,7 @@ time points, and then becomes roughly constant.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 4.490 seconds)
**Total running time of the script:** (0 minutes 4.582 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_fluorescence_nuclear_envelope.py:
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Expand Up @@ -282,15 +282,15 @@ Once the features are extracted, we can train and test a new classifier.

.. code-block:: none
Computing the full feature set took 28.379s, plus 2.690s training, for an AUC of 1.00. Computing the restricted feature set took 0.099s, plus 2.208s training, for an AUC of 1.00.
Computing the full feature set took 28.624s, plus 2.918s training, for an AUC of 1.00. Computing the restricted feature set took 0.164s, plus 2.389s training, for an AUC of 1.00.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 36.263 seconds)
**Total running time of the script:** (0 minutes 37.659 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_haar_extraction_selection_classification.py:
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Expand Up @@ -350,9 +350,6 @@ by dichotomy, visually and manually.
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_005.png
:class: sphx-glr-single-img

.. raw:: html
:file: images/sphx_glr_plot_human_mitosis_006.html




Expand Down Expand Up @@ -445,9 +442,9 @@ label with argument `bg_label=0`.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_007.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_006.png
:alt: Overlapping nuclei, Segmented nuclei
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_007.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_006.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -522,7 +519,7 @@ cells in this sample. Therefore, we estimate the mitotic index to be:
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 3.164 seconds)
**Total running time of the script:** (0 minutes 3.200 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_human_mitosis.py:
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Expand Up @@ -192,7 +192,7 @@ Blend

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.784 seconds)
**Total running time of the script:** (0 minutes 2.671 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_image_comparison.py:
Expand Down
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