add _pkgdown file

rformassspectrometry · May 13, 2024 · f857e08 · f857e08
1 parent 79aa24a
commit f857e08
Showing 1 changed file with 40 additions and 31 deletions.
diff --git a/pkgdown/_pkgdown.yml b/pkgdown/_pkgdown.yml
@@ -2,52 +2,61 @@ reference:
   - title: "QFeatures class"
     desc: "The QFeatures class"
     contents:
-      - QFeatures
-      - show
-      - plot
-      - joinAssay
-      - assayLink
-      - assayLinks
-      - addAssayLink
-      - addAssayLinkOneToOne
-      - dropEmptyAssays
-      - countUniqueFeatures
+    - QFeatures
+    - joinAssays
+    - assayLink
+    - assayLinks
+    - addAssayLink
+    - addAssayLinkOneToOne
+    - dropEmptyAssays
+    - countUniqueFeatures
+    - display
   - title: "Data import"
     desc: "Create QFeatures and SummarizedExperiment object"
     contents:
-      - readQFeatures
-      - readQFeaturesFromDIANN
-      - readSummarizedExperiment
+    - readQFeatures
+    - readQFeaturesFromDIANN
+    - readSummarizedExperiment
   - title: "Missing data"
     desc: "Filtering and handling of missing values"
     contents:
-      - zeroIsNA
-      - infIsNA
-      - nNA
-      - filterNA
-      - impute
+    - zeroIsNA
+    - infIsNA
+    - nNA
+    - filterNA
+    - impute
   - title: QFeatures processing
     desc: "Quantitative data processing"
     contents:
-      - logTransform
-      - scaleTransform
-      - normaize
-      - sweep
+    - logTransform
+    - scaleTransform
+    - normalize
+    - sweep
   - title: "Feature aggregations"
     desc: "Feature aggregations"
     contents:
-      - aggregateFeatures
-      - adjacencyMatrix
-      - aggcounts
+    - aggregateFeatures
+    - adjacencyMatrix,SummarizedExperiment-method
+    - adjacencyMatrix,QFeatures-method
+    - aggcounts
   - title: "Filtering"
     desc: "Feature filtering"
     contents:
-      - filterFeatures
-      - VariableFilter
-      - subsetByFeature
+    - filterFeatures
+    - VariableFilter
+    - subsetByFeature
   - title: "Example data"
     desc: "Example data"
     contents:
-      - feat1
-      - feat3
-      - hlpsms
+    - feat1
+    - feat3
+    - hlpsms
+  - title: "DataFrame"
+    desc: "DataFrame functions"
+    contents:
+    - reduceDataFrame
+    - unfoldDataFrame
+  - title: "Generic functions"
+    desc: "Package generics"
+    contents:
+    - AllGenerics