Adamant is a JSON schema-based metadata creation tool presented in a user-friendly interface. Adamant aims to ease the integration of various research data management (RDM) workflows into the everyday research routine of especially small independent laboratories, which hopefully leads to the generation of research data that adhere to the FAIR (findable, accessible, interoperable, reusable) principles. As of now, Adamant supports the following features:
- Rendering of interactive web-form based on a valid JSON schema
- User-friendly editing process of the rendered web-form and the corresponding schema
- Creating a valid JSON schema and web-form from scratch
- Live validation for various field types
- Quick re-use of existing schemas from a list
- Downloadable JSON schema and its form data
- API-based integration as various form submission functionalities
A live demo of Adamant (client only) is available at: https://plasma-mds.github.io/adamant/.
- Minor bugs
- Searchable existing schemas
- Browse-able sub-schema for Object type
- Editable & browse-able item schema for Array type
- Re-organized schema buttons & selection field
- Leaner fields
Currently, Adamant supports the rendering and editing of JSON schemas with a specification version draft 4 and 7. The following table lists all the implemented JSON schema keywords in the current version of Adamant. Note that the id keyword only works with the JSON schema specification version draft 4, whereas $id is used for the newer specification drafts. Lastly, the contentEncoding keyword is intended to be used with the specification version draft 7 or newer.
| Field Type | Implemented Keywords | Note |
|---|---|---|
| String | title, id, $id, description, type, enum, contentEncoding, default, minLength, maxLength |
contentEncoding can only receive a string value of "base64" |
| Number | title, id, $id, description, type, enum, default, minimum, maximum |
|
| Integer | title, id, $id, description, type, enum, default, minimum, maximum |
|
| Boolean | title, id, $id, description, type, default |
|
| Array | title , id, $id, description, type, default, items, minItems, maxItems, uniqueItems |
|
| Object | title, id, $id, description, type, properties, required |
Setting up Adamant on a local machine for development:
$ git clone https://github.com/csihda/adamant.git—clone the repository$ cd adamant—go to adamant project directoryadamant$ npm install—install the dependencies for the client-sideadamant$ cd backend—go to backend directoryadamant/backend$ python -m venv venv—create a python virtual environmentadamant/backend$ ./venv/Scripts/activate—activate the virtual environmentadamant/backend$ pip install -r requirements.txt—install the dependencies for the back-endadamant/backend$ cd ..—go back to adamant project directoryadamant$ yarn start-api—start the back-endadamant$ yarn start—on a new terminal, in the adamant project directory, start the front-end
By default, Adamant is accessible at http://localhost:3000.
We recommend deploying Adamant with docker-compose, which can be done with ease:
$ git clone https://github.com/csihda/adamant.git—clone the repository$ cd adamant—go to adamant project directoryadamant$ docker−compose build—build the docker images for both back-end and front-endadamant$ docker−compose up -d—start both client and server containers, i.e., the whole system
By default, the deployed system can be accessed at http://localhost:3000.
Please cite this paper if you use this code/tool in your publication.
@article{ 10.12688/f1000research.110875.2,
author = {Chaerony Siffa, I and Schäfer, J and Becker, MM},
title = {Adamant: a JSON schema-based metadata editor for research data management workflows
[version 2; peer review: 3 approved]},
journal = {F1000Research},
volume = {11},
year = {2022},
number = {475},
doi = {10.12688/f1000research.110875.2}
}
The work was funded by the Federal Ministry of Education and Research (BMBF) under the grant mark 16QK03A. The responsibility for the content of this repository lies with the authors.