Create ci.yml

.github/workflows/ci.yml

@@ -0,0 +1,142 @@
+name: CI
+on:
+  push:
+    branches:
+      - "*"
+  pull_request:
+    branches:
+      - "*"
+  workflow_dispatch: # allows you to trigger manually
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  detect-ci-trigger:
+    name: detect ci trigger
+    runs-on: ubuntu-latest
+    if: |
+      github.repository == 'philipc2/sci-sonify'
+      && (github.event_name == 'push' || github.event_name == 'pull_request')
+    outputs:
+      triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 2
+  test:
+    name: ${{ matrix.os }} py${{ matrix.python-version }} ${{ matrix.env }}
+    runs-on: ${{ matrix.os }}
+    needs: detect-ci-trigger
+    if: needs.detect-ci-trigger.outputs.triggered == 'false'
+    defaults:
+      run:
+        shell: bash -l {0}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["ubuntu-latest", "macos-latest", "windows-latest"]
+        # Bookend python versions
+        python-version: ["3.9", "3.11"]
+        env: [""]
+        include:
+          # Minimum python version:
+          - env: "bare-minimum"
+            python-version: "3.9"
+            os: ubuntu-latest
+          - env: "min-all-deps"
+            python-version: "3.9"
+            os: ubuntu-latest
+          # Latest python version:
+          - env: "all-but-dask"
+            python-version: "3.10"
+            os: ubuntu-latest
+          - env: "flaky"
+            python-version: "3.10"
+            os: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0 # Fetch all history for all branches and tags.
+      - name: Set environment variables
+        run: |
+          echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
+
+          if [[ "${{matrix.python-version}}" == "3.11" ]]; then
+            if [[ ${{matrix.os}} == windows* ]]; then
+              echo "CONDA_ENV_FILE=ci/requirements/environment-windows-py311.yml" >> $GITHUB_ENV
+            else
+              echo "CONDA_ENV_FILE=ci/requirements/environment-py311.yml" >> $GITHUB_ENV
+            fi
+          elif [[ ${{ matrix.os }} == windows* ]] ;
+          then
+            echo "CONDA_ENV_FILE=ci/requirements/environment-windows.yml" >> $GITHUB_ENV
+          elif [[ "${{ matrix.env }}" != "" ]] ;
+          then
+            if [[ "${{ matrix.env }}" == "flaky" ]] ;
+            then
+              echo "CONDA_ENV_FILE=ci/requirements/environment.yml" >> $GITHUB_ENV
+              echo "PYTEST_EXTRA_FLAGS=--run-flaky --run-network-tests" >> $GITHUB_ENV
+            else
+              echo "CONDA_ENV_FILE=ci/requirements/${{ matrix.env }}.yml" >> $GITHUB_ENV
+            fi
+          else
+            echo "CONDA_ENV_FILE=ci/requirements/environment.yml" >> $GITHUB_ENV
+          fi
+
+          echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV
+
+      - name: Setup micromamba
+        uses: mamba-org/setup-micromamba@v1
+        with:
+          environment-file: ${{ env.CONDA_ENV_FILE }}
+          environment-name: scisonify-tests
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
+          create-args: >-
+            python=${{matrix.python-version}}
+            conda
+
+      # We only want to install this on one run, because otherwise we'll have
+      # duplicate annotations.
+      - name: Install error reporter
+        if: ${{ matrix.os }} == 'ubuntu-latest' and ${{ matrix.python-version }} == '3.10'
+        run: |
+          python -m pip install pytest-github-actions-annotate-failures
+
+      - name: Install SciSonify
+        run: |
+          python -m pip install --no-deps -e .
+
+      - name: Version info
+        run: |
+          conda info -a
+          conda list
+
+      - name: Import SciSonify
+        run: |
+          python -c "import scisonify"
+
+      - name: Run tests
+        run: python -m pytest -n 4
+          --timeout 180
+          --cov-report=xml
+          --junitxml=pytest.xml
+          $PYTEST_EXTRA_FLAGS
+
+      - name: Upload test results
+        if: always()
+        uses: actions/upload-artifact@v3
+        with:
+          name: Test results for ${{ runner.os }}-${{ matrix.python-version }}
+          path: pytest.xml
+
+      - name: Upload code coverage to Codecov
+        uses: codecov/[email protected]
+        with:
+          file: ./coverage.xml
+          flags: unittests
+          env_vars: RUNNER_OS,PYTHON_VERSION
+          name: codecov-umbrella
+          fail_ci_if_error: false