Repositories list

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •25•44•9•0•Updated Jan 24, 2025Jan 24, 2025

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Shell

  •

  Artistic License 2.0

  •31•74•16•3•Updated Jan 24, 2025Jan 24, 2025

• BiocHubsShiny

  Public
  R

  •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• bioconductor_salt

  Public
  Salt to configure Linux and Mac (x86_64, arm64) for the BBS

  vagrantsaltstackbioconductor

  SaltStack

  •3•1•26•2•Updated Jan 24, 2025Jan 24, 2025

• AnVIL

  Public
  Interact with AnVIL and Leonardo projects

  R

  •10•8•12•0•Updated Jan 24, 2025Jan 24, 2025

• AnVILGCP

  Public
  Functionality for the AnVIL platform using GCP

  R

  •0•0•1•0•Updated Jan 23, 2025Jan 23, 2025

• GenomeInfoDb

  Public
  Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

  bioconductor-packagecore-package

  R

  •13•32•7•0•Updated Jan 23, 2025Jan 23, 2025

• hubsingest

  Public
  Scripts to facilitate ingestion at temporary endpoints for data targeting the Bioconductor Hubs

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• BBS

  Public
  The Bioconductor Build System

  Shell

  •11•9•48•2•Updated Jan 23, 2025Jan 23, 2025

• BiocHubsIngestR

  Public
  Helper package for users to upload data to temporary BiocHubsIngest endpoints

  u24ca289073

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• gbcc2025

  Public
  CSS

  •

  MIT License

  •2•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• EuroBioC2025

  Public
  Website of the European Bioconductor Conference 2025

  conferencebioconductoreuropean

  CSS

  •3•2•0•0•Updated Jan 23, 2025Jan 23, 2025

• BiocSlack

  Public
  CSS

  •

  MIT License

  •0•1•0•0•Updated Jan 23, 2025Jan 23, 2025

• BiocGenerics

  Public
  Defines many S4 generic functions used in Bioconductor

  bioconductor-packagecore-package

  R

  •7•12•0•0•Updated Jan 22, 2025Jan 22, 2025

• BSgenome

  Public
  Software infrastructure for efficient representation of full genomes and their SNPs

  bioconductor-packagecore-package

  R

  •8•9•7•0•Updated Jan 21, 2025Jan 21, 2025

• pwalign

  Public
  Perform pairwise sequence alignments

  bioconductor-package

  R

  •1•1•7•0•Updated Jan 21, 2025Jan 21, 2025

• HDF5Array

  Public
  HDF5 datasets as array-like objects in R

  bioconductor-packagecore-packageu24ca289073

  R

  •14•11•4•1•Updated Jan 21, 2025Jan 21, 2025

• HubPub

  Public
  bioconductor-package

  R

  •4•3•4•1•Updated Jan 21, 2025Jan 21, 2025

• BiocReporting

  Public
  Public repo for Bioconductor project reporting 2022

  TeX

  •6•0•0•0•Updated Jan 18, 2025Jan 18, 2025

• DelayedArray

  Public
  A unified framework for working transparently with on-disk and in-memory array-like datasets

  bioconductor-packagecore-packageu24ca289073

  R

  •9•26•18•0•Updated Jan 17, 2025Jan 17, 2025

• SparseArray

  Public
  High-performance sparse data representation and manipulation in R

  bioconductor-packagecore-package

  C

  •2•8•3•0•Updated Jan 17, 2025Jan 17, 2025

• BiocFileCache

  Public
  Manage Files Across Sessions

  core-packageu24ca289073

  R

  •8•13•10•1•Updated Jan 17, 2025Jan 17, 2025

• UCSC.utils

  Public
  Low-level utilities to retrieve data from the UCSC Genome Browser

  bioconductor-packagecore-package

  R

  •0•1•0•0•Updated Jan 15, 2025Jan 15, 2025

• pkgrevdocs

  Public
  Training Material for Community Reviewers

  TeX

  •

  Other

  •18•8•10•2•Updated Jan 15, 2025Jan 15, 2025

• S4Arrays

  Public
  Foundation of array-like containers in Bioconductor

  bioconductor-packagecore-package

  R

  •1•5•0•0•Updated Jan 14, 2025Jan 14, 2025

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •40•25•13•11•Updated Jan 13, 2025Jan 13, 2025

• BiocWorkingGroups

  Public
  Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

  communitybookworking-group+ 2bioconductorguidelines

  TeX

  •12•8•0•0•Updated Jan 13, 2025Jan 13, 2025

• biocblog

  Public
  A Quarto blog for Bioconductor community

  blogcommunityr+ 4bioconductorhacktoberfestquartohacktoberfest2022

  HTML

  •28•10•6•1•Updated Jan 11, 2025Jan 11, 2025

• bio-web-stats

  Public
  Code base for replacement of stats.bioconductor.org (download_stats)

  Python

  •0•1•3•0•Updated Jan 9, 2025Jan 9, 2025

• MatrixGenerics

  Public
  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

  bioconductor-packagecore-package

  R

  •1•12•5•0•Updated Jan 9, 2025Jan 9, 2025