Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

TASK-6445 - Implement OpenCGA Workflows with NextFlow #1006

Open
wants to merge 42 commits into
base: develop
Choose a base branch
from
Open

TASK-6445 - Implement OpenCGA Workflows with NextFlow #1006

wants to merge 42 commits into from

Conversation

jmjuanes
Copy link
Member

No description provided.

imedina and others added 30 commits September 12, 2024 02:15
@imedina
Update OpenCGA javascript client
b0c8a25
@imedina
wc: add new workflow components
8fc0056
@imedina
core: add workflow-script-view component
77adb96
@imedina
Update OpenCGA client REST API
d74522a
@imedina
wc: add new components to execute workflows and custom tools
b7ed659
@imedina
wc: improvements in the navbar component
43417d6
@imedina
wc: minor improvements in workflows
0fc1e19
@imedina
wc: implement workflow-create
f66c919
@imedina
wc: add worflow create
d5bf175
@imedina
Changes:
3644d99 
* Add new tool to build custom tools
* Update workflow-create
* add workflows to opencgaSession
@imedina
wc: new workflow-manager implemented
708a069
@imedina
Merge branch 'TASK-6780' into TASK-6445
0a01c33
@imedina
wc: fix workflow-browser id param
52e255f
@imedina
wc: fix Note browser detail tabs
77f2bfa
@imedina
wc: add new variant-notes detail tab in the variant browser
99a65cf
@imedina
wc: minor improvements and fixes in the workflows
4a0e388
@imedina
core: workflow manager and imoprt first implementation ready
3760905
@imedina
Merge branch 'develop' into TASK-6445
939c068
@imedina
core: initial work on new file data manager
b588399
@imedina
dcore: fix workflow-import
6ee7982
@imedina
wc: intial bcftools component
5237664
@imedina
wc: intial bcftools component
f7f8384
@imedina
Merge branch 'develop' into TASK-6445
e7c6026
@imedina
package: update dependencies
f0244d3
@imedina
wc: work on new BCFTools
3ca802f
@jmjuanes
Merge branch 'develop' into TASK-6445
ca2349a
@jmjuanes
wc: New column note type #TASK-7267 #TASK-6445
7bfc428
@jmjuanes
wc: Fix form to create a new note for including note type field #TASK…
0f0cbf1 
…-7267 #TASK-6445
@jmjuanes
wc: Fix form to update a note for including note type field #TASK-726…
f7be5f7 
…7 #TASK-6445
@jmjuanes
wc: Add new filter noteType in filters list #TASK-7267 #TASK-6445
8bc013d
@jmjuanes
wc: Add note type as a filter in note browser #TASK-7267 #TASK-6445
180bf56
@jmjuanes
wc: Fix getting value of note type filter #TASK-7267 #TASK-6445
5c73263
@jmjuanes
wc: Allow to filter by tags in note-browser #TASK-7267 #TASK-6445
baed514
@jmjuanes
wc: Fix rendering variant notes #TASK-7267 #TASK-6445
88b50ae
@jmjuanes
wc: Improve rendering notes in variant-notes component #TASK-7267 #TA…
439945b 
…SK-6445
@jmjuanes
wc: Fix bug in query to get variant notes #TASK-7267 #TASK-6445
cbe8835
@jmjuanes
wc: Remove comment in variant browser #TASK-7267 #TASK-6445
696d2b2
@jmjuanes
Merge branch 'develop' into TASK-6445
dae9548
@jmjuanes
wc: Add notes tab in interpreter browser rd #TASK-7267 #TASK-6445
2e36a49
@jmjuanes
wc: Add notes tab in interpreter browser snv #TASK-7267 #TASK-6445
6bcacc5
@jmjuanes
wc: Add notes tab in interpreter browser cnv #TASK-7267 #TASK-6445
bf22751
@jmjuanes
wc: Add notes tab in interpreter browser rearrangement #TASK-7267 #TA…
ef17124 
…SK-6445
@sonarqubecloud SonarQubeCloud
Copy link

Quality Gate Failed Quality Gate failed

Failed conditions
28.6% Duplication on New Code (required ≤ 3%)
C Reliability Rating on New Code (required ≥ A)

See analysis details on SonarQube Cloud

Catch issues before they fail your Quality Gate with our IDE extension SonarQube for IDE

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@jmjuanes @imedina