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iva: Fix class for rendering tools content #TASK-7216 #TASK-7100
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@jmjuanes
jmjuanes committed Nov 25, 2024
1 parent 6d13fd6 commit bad0d67
Showing 1 changed file with 38 additions and 38 deletions.
76 changes: 38 additions & 38 deletions src/sites/iva/iva-app.js
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Original file line number Diff line number Diff line change
Expand Up @@ -1717,7 +1717,7 @@ class IvaApp extends LitElement {
title="Workflow Manager"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<workflow-manager
.opencgaSession="${this.opencgaSession}">
</workflow-manager>
Expand All @@ -1730,7 +1730,7 @@ class IvaApp extends LitElement {
title="Workflow Analysis Executor"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<workflow-analysis
.toolParams="${{id: this.workflowId}}"
.opencgaSession="${this.opencgaSession}">
Expand Down Expand Up @@ -1826,7 +1826,7 @@ class IvaApp extends LitElement {
title="Sample Variant Stats Analysis"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<sample-variant-stats-analysis
.opencgaSession="${this.opencgaSession}">
</sample-variant-stats-analysis>
Expand All @@ -1839,7 +1839,7 @@ class IvaApp extends LitElement {
title="Cohort Variant Stats Analysis"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<cohort-variant-stats-analysis
.opencgaSession="${this.opencgaSession}">
</cohort-variant-stats-analysis>
Expand All @@ -1848,7 +1848,7 @@ class IvaApp extends LitElement {
break;
case "eligibility":
content = html`
<div class="container">
<div class="content">
<opencga-variant-eligibility-analysis
.opencgaSession="${this.opencgaSession}">
</opencga-variant-eligibility-analysis>
Expand All @@ -1857,7 +1857,7 @@ class IvaApp extends LitElement {
break;
case "sample-eligibility":
content = html`
<div class="container">
<div class="content">
<sample-eligibility-analysis
.opencgaSession="${this.opencgaSession}">
</sample-eligibility-analysis>
Expand All @@ -1866,7 +1866,7 @@ class IvaApp extends LitElement {
break;
case "knockout":
content = html`
<div class="container">
<div class="content">
<knockout-analysis
.opencgaSession="${this.opencgaSession}">
</knockout-analysis>
Expand All @@ -1875,7 +1875,7 @@ class IvaApp extends LitElement {
break;
case "inferred-sex":
content = html`
<div class="container">
<div class="content">
<inferred-sex-analysis
.opencgaSession="${this.opencgaSession}"
.config=${{title: ""}}>
Expand All @@ -1885,7 +1885,7 @@ class IvaApp extends LitElement {
break;
case "individual-relatedness":
content = html`
<div class="container">
<div class="content">
<individual-relatedness-analysis
.opencgaSession="${this.opencgaSession}"
.config=${{title: ""}}>
Expand All @@ -1895,7 +1895,7 @@ class IvaApp extends LitElement {
break;
case "mendelian-error":
content = html`
<div class="container">
<div class="content">
<mendelian-error-analysis
.opencgaSession="${this.opencgaSession}">
</mendelian-error-analysis>
Expand All @@ -1908,7 +1908,7 @@ class IvaApp extends LitElement {
title="Sample QC Analysis"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<sample-qc-analysis
.opencgaSession="${this.opencgaSession}"
.config=${{title: ""}}>
Expand All @@ -1922,7 +1922,7 @@ class IvaApp extends LitElement {
title="Individual QC Analysis"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<individual-qc-analysis
.opencgaSession="${this.opencgaSession}"
.config=${{title: ""}}>
Expand All @@ -1936,7 +1936,7 @@ class IvaApp extends LitElement {
title="Family QC Analysis"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<family-qc-analysis
.opencgaSession="${this.opencgaSession}"
.config=${{title: ""}}>
Expand All @@ -1946,7 +1946,7 @@ class IvaApp extends LitElement {
break;
case "plink":
content = html`
<div class="container">
<div class="content">
<opencga-plink-analysis
.opencgaSession="${this.opencgaSession}">
</opencga-plink-analysis>
Expand All @@ -1955,7 +1955,7 @@ class IvaApp extends LitElement {
break;
case "gatk":
content = html`
<div class="container">
<div class="content">
<opencga-gatk-analysis
.opencgaSession="${this.opencgaSession}">
</opencga-gatk-analysis>
Expand All @@ -1964,7 +1964,7 @@ class IvaApp extends LitElement {
break;
case "variant-export":
content = html`
<div class="container">
<div class="content">
<variant-export-analysis
.opencgaSession="${this.opencgaSession}">
</variant-export-analysis>
Expand All @@ -1973,7 +1973,7 @@ class IvaApp extends LitElement {
break;
case "variant-stats-exporter":
content = html`
<div class="container">
<div class="content">
<opencga-variant-stats-exporter-analysis
.opencgaSession="${this.opencgaSession}">
</opencga-variant-stats-exporter-analysis>
Expand All @@ -1982,7 +1982,7 @@ class IvaApp extends LitElement {
break;
case "mutational-signature":
content = html`
<div class="container">
<div class="content">
<mutational-signature-analysis
.opencgaSession="${this.opencgaSession}">
</mutational-signature-analysis>
Expand All @@ -1995,7 +1995,7 @@ class IvaApp extends LitElement {
title="GWAS Analysis"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<gwas-analysis
.opencgaSession="${this.opencgaSession}">
</gwas-analysis>
Expand All @@ -2004,7 +2004,7 @@ class IvaApp extends LitElement {
break;
case "rd-tiering":
content = html`
<div class="container">
<div class="content">
<rd-tiering-analysis
.opencgaSession="${this.opencgaSession}">
</rd-tiering-analysis>
Expand All @@ -2017,7 +2017,7 @@ class IvaApp extends LitElement {
title="Create Case"
icon="fas fa-window-restore">
</tool-header>
<div class="container">
<div class="content">
<clinical-analysis-create
.opencgaSession="${this.opencgaSession}"
@clinicalanalysischange="${this.onClinicalAnalysisEditor}">
Expand All @@ -2028,7 +2028,7 @@ class IvaApp extends LitElement {
case "account":
case "profile":
content = html`
<div class="container">
<div class="content">
<user-profile
.opencgaSession="${this.opencgaSession}"
.settings="${this.settings.USER_PROFILE_SETTINGS}">
Expand All @@ -2038,7 +2038,7 @@ class IvaApp extends LitElement {
break;
case "file-manager":
content = html`
<div class="container">
<div class="content">
<file-manager
.opencgaSession="${this.opencgaSession}">
</file-manager>
Expand All @@ -2047,7 +2047,7 @@ class IvaApp extends LitElement {
break;
case "file-data-manager":
content = html`
<div class="container">
<div class="content">
<file-data-manager
.opencgaSession="${this.opencgaSession}">
</file-data-manager>
Expand All @@ -2056,7 +2056,7 @@ class IvaApp extends LitElement {
break;
case "interpreter":
content = html`
<div class="container">
<div class="content">
<variant-interpreter
.opencgaSession="${this.opencgaSession}"
.cellbaseClient="${this.cellbaseClient || this.opencgaSession.cellbaseClient}"
Expand All @@ -2069,7 +2069,7 @@ class IvaApp extends LitElement {
break;
case "alignment-index":
content = html`
<div class="container">
<div class="content">
<opencga-alignment-index-analysis
.opencgaSession="${this.opencgaSession}">
</opencga-alignment-index-analysis>
Expand All @@ -2078,7 +2078,7 @@ class IvaApp extends LitElement {
break;
case "coverage-index":
content = html`
<div class="container">
<div class="content">
<opencga-coverage-index-analysis
.opencgaSession="${this.opencgaSession}">
</opencga-coverage-index-analysis>
Expand All @@ -2087,7 +2087,7 @@ class IvaApp extends LitElement {
break;
case "alignment-stats":
content = html`
<div class="container">
<div class="content">
<opencga-alignment-stats-analysis
.opencgaSession="${this.opencgaSession}">
</opencga-alignment-stats-analysis>
Expand All @@ -2100,7 +2100,7 @@ class IvaApp extends LitElement {
title="${this.jobSelected || "No job selected"}"
icon="${"fas fa-rocket"}">
</tool-header>
<div class="container">
<div class="content">
<job-view
mode="full"
.jobId="${this.jobSelected}"
Expand All @@ -2115,7 +2115,7 @@ class IvaApp extends LitElement {
title="Tool Analysis Executor"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<tool-analysis
.opencgaSession="${this.opencgaSession}">
</tool-analysis>
Expand All @@ -2128,7 +2128,7 @@ class IvaApp extends LitElement {
title="Custom Tool Builder"
icon="fas fa-stream">
</tool-header>
<div class="container">
<div class="content">
<custom-tool-builder
.opencgaSession="${this.opencgaSession}">
</custom-tool-builder>
Expand All @@ -2141,7 +2141,7 @@ class IvaApp extends LitElement {
title="Organization Admin: ${this.opencgaSession?.user?.organization}"
icon="fas fa-sitemap">
</tool-header>
<div class="container">
<div class="content">
<organization-admin
.organization="${this.opencgaSession?.organization}"
.opencgaSession="${this.opencgaSession}"
Expand All @@ -2153,7 +2153,7 @@ class IvaApp extends LitElement {
break;
case "catalog-admin":
content = html`
<div class="container">
<div class="content">
<catalog-admin
.opencgaSession="${this.opencgaSession}"
@sessionUpdateRequest="${this.onSessionUpdateRequest}">
Expand All @@ -2167,7 +2167,7 @@ class IvaApp extends LitElement {
title="Study Dashboard"
icon="fas fa-rocket">
</tool-header>
<div class="container">
<div class="content">
<projects-admin
.opencgaSession="${this.opencgaSession}"
@sessionUpdateRequest="${this.onSessionUpdateRequest}">
Expand All @@ -2177,7 +2177,7 @@ class IvaApp extends LitElement {
break;
case "study-admin":
content = html`
<div class="container">
<div class="content">
<study-admin
.opencgaSession="${this.opencgaSession}"
@studyUpdateRequest="${this.onStudyUpdateRequest}">
Expand All @@ -2187,7 +2187,7 @@ class IvaApp extends LitElement {
break;
case "study-admin-iva":
content = html`
<div class="container">
<div class="content">
<study-admin-iva
.organizationId="${this.opencgaSession?.user?.organization}"
.opencgaSession="${this.opencgaSession}"
Expand All @@ -2199,7 +2199,7 @@ class IvaApp extends LitElement {
break;
case "operations-admin":
content = html`
<div class="container">
<div class="content">
<operations-admin
.organizationId="${this.opencgaSession?.user?.organization}"
.study="${this.opencgaSession.study}"
Expand All @@ -2215,7 +2215,7 @@ class IvaApp extends LitElement {
title="REST API"
icon="fas fa-rocket">
</tool-header>
<div class="container">
<div class="content">
<rest-api
.opencgaSession="${this.opencgaSession}">
</rest-api>
Expand Down

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