Merge branch 'release-3.x.x' into TASK-6629

opencb · Nov 8, 2024 · a7143d8 · a7143d8
2 parents 3af0906 + 13a3c11
commit a7143d8
Show file tree

Hide file tree

Showing 51 changed files with 959 additions and 44,047 deletions.
diff --git a/src/exclude b/src/exclude
diff --git a/src/index.js b/src/index.js
diff --git a/src/sites/iva/iva-app.js b/src/sites/iva/iva-app.js
@@ -39,7 +39,6 @@ import "../../webcomponents/opencga/opencga-protein-view.js";
 import "../../webcomponents/sample/sample-browser.js";
 import "../../webcomponents/sample/sample-view.js";
 import "../../webcomponents/sample/sample-variant-stats-browser.js";
-import "../../webcomponents/sample/sample-cancer-variant-stats-browser.js";
 import "../../webcomponents/sample/sample-update.js";
 import "../../webcomponents/disease-panel/disease-panel-browser.js";
 import "../../webcomponents/disease-panel/disease-panel-update.js";
@@ -51,7 +50,6 @@ import "../../webcomponents/individual/individual-update.js";
 import "../../webcomponents/cohort/cohort-browser.js";
 import "../../webcomponents/job/job-browser.js";
 import "../../webcomponents/job/job-view.js";
-import "../../webcomponents/clinical/analysis/mutational-signature-analysis.js";
 import "../../webcomponents/variant/analysis/gwas-analysis.js";
 import "../../webcomponents/variant/analysis/sample-variant-stats-analysis.js";
 import "../../webcomponents/variant/analysis/cohort-variant-stats-analysis.js";
@@ -72,7 +70,8 @@ import "../../webcomponents/variant/interpretation/variant-interpreter-browser-c
 import "../../webcomponents/variant/interpretation/variant-interpreter-browser-rearrangement.js";
 import "../../webcomponents/variant/interpretation/variant-interpreter.js";
 import "../../webcomponents/clinical/analysis/rd-tiering-analysis.js";
-import "../../webcomponents/clinical/analysis/hrdetect-analysis.js";
+import "../../webcomponents/clinical/analysis/mutational-signature-analysis.js";
+import "../../webcomponents/clinical/analysis/mutational-signature-view.js";
 import "../../webcomponents/clinical/clinical-analysis-create.js";
 import "../../webcomponents/file/file-manager.js";
 import "../../webcomponents/job/job-monitor.js";
@@ -169,7 +168,6 @@ class IvaApp extends LitElement {
             "sample",
             "sample-view",
             "sampleVariantStatsBrowser",
-            "sampleCancerVariantStatsBrowser",
             "sampleUpdate",
             "sample-variant-stats",
             "individual",
@@ -898,7 +896,6 @@ class IvaApp extends LitElement {
                     }
                     break;
                 case "#sampleVariantStatsBrowser":
-                case "#sampleCancerVariantStatsBrowser":
                 case "#sampleUpdate":
                     this.sampleId = hashQuery;
                     break;
@@ -1768,12 +1765,6 @@ class IvaApp extends LitElement {
                         </div>
                     ` : nothing}
 
-                    ${this.config.enabledComponents["sampleCancerVariantStatsBrowser"] ? html`
-                        <div class="content" id="sampleCancerVariantStatsBrowser">
-                            <sample-cancer-variant-stats-browser .opencgaSession="${this.opencgaSession}" .sampleId="${this.sampleId}" .active="${true}"></sample-cancer-variant-stats-browser>
-                        </div>
-                    ` : nothing}
-
                     ${this.config.enabledComponents["sample-variant-stats"] ? html`
                         <div class="container py-3" id="sample-variant-stats-analysis">
                             <sample-variant-stats-analysis

diff --git a/src/webcomponents/clinical/analysis/hrdetect-analysis.js b/src/webcomponents/clinical/analysis/hrdetect-analysis.js