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wc - Create file #TASK-7220 #TASK-7100
Signed-off-by: gpveronica <[email protected]>
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| /** | ||
| * Copyright 2015-2024 OpenCB | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
|
|
||
| import {html, LitElement} from "lit"; | ||
| import LitUtils from "../commons/utils/lit-utils.js"; | ||
| import NotificationUtils from "../commons/utils/notification-utils.js"; | ||
| import "../commons/filters/catalog-search-autocomplete.js"; | ||
|
|
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| const FILE_TYPE = "FILE"; | ||
|
|
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| export default class FileCreate extends LitElement { | ||
|
|
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| constructor() { | ||
| super(); | ||
|
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| this.#init(); | ||
| } | ||
|
|
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| createRenderRoot() { | ||
| return this; | ||
| } | ||
|
|
||
| static get properties() { | ||
| return { | ||
| path: { | ||
| type: String, | ||
| }, | ||
| opencgaSession: { | ||
| type: Object | ||
| }, | ||
| displayConfig: { | ||
| type: Object | ||
| }, | ||
| }; | ||
| } | ||
|
|
||
| #init() { | ||
| this.isLoading = false; | ||
| this.displayConfigDefault = { | ||
| style: "margin: 10px", | ||
| titleWidth: 3, | ||
| defaultLayout: "horizontal", | ||
| buttonOkText: "Create File", | ||
| buttonClearText: "Discard Changes", | ||
| }; | ||
|
|
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| this._formats = []; | ||
|
|
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| this.#initOriginalObjects(); | ||
| } | ||
|
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| #initOriginalObjects() { | ||
| this._file = { | ||
| type: FILE_TYPE, | ||
| }; | ||
| this._config = this.getDefaultConfig(); | ||
| } | ||
|
|
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| #setLoading(value) { | ||
| this.isLoading = value; | ||
| this.requestUpdate(); | ||
| } | ||
|
|
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| update(changedProperties) { | ||
| if (changedProperties.has("opencgaSession")) { | ||
| this.opencgaSessionObserver(); | ||
| } | ||
| if (changedProperties.has("path")) { | ||
| this._file.path = `/${this.path}`; | ||
| } | ||
| if (changedProperties.has("displayConfig")) { | ||
| this.displayConfig = { | ||
| ...this.displayConfigDefault, | ||
| ...this.displayConfig, | ||
| }; | ||
| this._config = this.getDefaultConfig(); | ||
| } | ||
| super.update(changedProperties); | ||
| } | ||
|
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| opencgaSessionObserver() { | ||
| this._formats = { | ||
| "formats": { | ||
| endpoint: this.opencgaSession.opencgaClient.files().formats(), | ||
| values: [], | ||
| }, | ||
| "bioformats": { | ||
| endpoint: this.opencgaSession.opencgaClient.files().bioformats(), | ||
| values: [], | ||
| }, | ||
| }; | ||
| // Retrieve from OpenCGA the list of defined formats and bioformats | ||
| const promiseList = Object.keys(this._formats).map(promise => { | ||
| return this._formats[promise]["endpoint"] | ||
| .then(response => this._formats[promise]["values"] = response.getResponse().results) | ||
| .catch( error => NotificationUtils.dispatch(this, NotificationUtils.NOTIFY_RESPONSE, error)) | ||
| }); | ||
| Promise.all(promiseList) | ||
| .then(() => { | ||
| this._config = this.getDefaultConfig(); | ||
| this.requestUpdate(); | ||
| }); | ||
| } | ||
|
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|
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| onFieldChange(e) { | ||
| this._file = {...e.detail.data}; // force to refresh the object-list | ||
| this.requestUpdate(); | ||
| } | ||
|
|
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| onClear() { | ||
| NotificationUtils.dispatch(this, NotificationUtils.NOTIFY_CONFIRMATION, { | ||
| title: "Clear File", | ||
| message: "Are you sure to clear?", | ||
| ok: () => { | ||
| this.#initOriginalObjects(); | ||
| this.requestUpdate(); | ||
| }, | ||
| }); | ||
| } | ||
|
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| onSubmit() { | ||
| let {name, ...rest} = this._file; | ||
| let data = { | ||
| ...rest, | ||
| path: `${this._file.path}${name}`, | ||
| } | ||
| let params = { | ||
| study: this.opencgaSession.study.fqn, | ||
| }; | ||
| let error; | ||
| this.#setLoading(true); | ||
| this.opencgaSession.opencgaClient.files() | ||
| .create(data, params) | ||
| .then(() => { | ||
| this.#initOriginalObjects(); | ||
| NotificationUtils.dispatch(this, NotificationUtils.NOTIFY_SUCCESS, { | ||
| title: "File Create", | ||
| message: "File created correctly", | ||
| }); | ||
| LitUtils.dispatchCustomEvent(this, "fileCreate", this._file); | ||
| }) | ||
| .catch(error => { | ||
| NotificationUtils.dispatch(this, NotificationUtils.NOTIFY_RESPONSE, error); | ||
| }) | ||
| .finally(() => { | ||
| this.#setLoading(false); | ||
| }); | ||
| } | ||
|
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| render() { | ||
| if (this.isLoading) { | ||
| return html`<loading-spinner></loading-spinner>`; | ||
| } | ||
|
|
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| return html` | ||
| <data-form | ||
| .data="${this._file}" | ||
| .config="${this._config}" | ||
| @fieldChange="${e => this.onFieldChange(e)}" | ||
| @clear="${e => this.onClear(e)}" | ||
| @submit="${e => this.onSubmit(e)}"> | ||
| </data-form>`; | ||
| } | ||
|
|
||
| getDefaultConfig() { | ||
| return { | ||
| display: this.displayConfig || this.displayConfigDefault, | ||
| sections: [ | ||
| { | ||
| title: "General Information", | ||
| elements: [ | ||
| { | ||
| title: "Type", | ||
| field: "type", | ||
| type: "input-text", | ||
| required: true, | ||
| display: { | ||
| defaultValue: "FILE", | ||
| disabled: true, | ||
| }, | ||
| }, | ||
| { | ||
| title: "Path", | ||
| field: "path", | ||
| type: "input-text", | ||
| required: true, | ||
| display: { | ||
| defaultValue: `/${this.path}`, | ||
| disabled: true, | ||
| }, | ||
| }, | ||
| { | ||
| title: "File Name", | ||
| field: "name", | ||
| required: true, | ||
| type: "input-text", | ||
| /* | ||
| validation: | ||
| validate: () => null, | ||
| message: "", | ||
| } | ||
| */ | ||
| }, | ||
| { | ||
| title: "Description", | ||
| field: "description", | ||
| type: "input-text", | ||
| }, | ||
| { | ||
| title: "Format", | ||
| field: "format", | ||
| type: "select", | ||
| allowedValues: this._formats["formats"]?.values, | ||
| display: { | ||
| helpMessage: "Please select a format", | ||
| }, | ||
| }, | ||
| { | ||
| title: "Bioformat", | ||
| field: "bioformat", | ||
| type: "select", | ||
| allowedValues: this._formats["bioformats"]?.values, | ||
| display: { | ||
| helpMessage: "Please select a bioformat", | ||
| }, | ||
| }, | ||
| { | ||
| title: "Job ID", | ||
| field: "jobId", | ||
| type: "input-text", | ||
| }, | ||
| { | ||
| title: "Sample IDs", | ||
| field: "sampleIds", | ||
| type: "custom", | ||
| display: { | ||
| render: (samples, dataFormFilterChange) => { | ||
| debugger | ||
| const handleSampleFilterChange = e => { | ||
| debugger | ||
| dataFormFilterChange(e.detail.value?.split(",") || []); | ||
| }; | ||
| return html ` | ||
| <catalog-search-autocomplete | ||
| .value="${samples?.join()}" | ||
| .resource="${"SAMPLE"}" | ||
| .opencgaSession="${this.opencgaSession}" | ||
| @filterChange="${e => handleSampleFilterChange(e)}"> | ||
| </catalog-search-autocomplete> | ||
| `; | ||
| } | ||
| }, | ||
| }, | ||
| { | ||
| title: "Content", | ||
| field: "content", | ||
| type: "input-text", | ||
| required: true, | ||
| display: { | ||
| rows: 5, | ||
| } | ||
| }, | ||
| ], | ||
| }, | ||
| ], | ||
| } | ||
| } | ||
| } | ||
|
|
||
| customElements.define("file-create", FileCreate); |
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