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core: add initial jupyter-notebook component
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,106 @@ | ||
| /* | ||
| * Copyright 2015-2016 OpenCB | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
|
|
||
| import {LitElement, html} from "lit"; | ||
| import UtilsNew from "../../../core/utils-new.js"; | ||
| import {guardPage} from "../html-utils.js"; | ||
| import "../../text-icon.js"; | ||
| import "./opencga-analysis-tool-form.js"; | ||
|
|
||
| export default class JupyterNotebook extends LitElement { | ||
|
|
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| constructor() { | ||
| super(); | ||
|
|
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| this._init(); | ||
| } | ||
|
|
||
| createRenderRoot() { | ||
| return this; | ||
| } | ||
|
|
||
| static get properties() { | ||
| return { | ||
| opencgaSession: { | ||
| type: Object | ||
| }, | ||
| config: { | ||
| type: Object | ||
| } | ||
| }; | ||
| } | ||
|
|
||
| _init() { | ||
| this._prefix = UtilsNew.randomString(8); | ||
| } | ||
|
|
||
| connectedCallback() { | ||
| super.connectedCallback(); | ||
| } | ||
|
|
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| update(changedProperties) { | ||
| if (changedProperties.has("config")) { | ||
| this._config = { | ||
| ...this.config | ||
| }; | ||
| // this.requestUpdate(); | ||
| } | ||
| super.update(changedProperties); | ||
| } | ||
|
|
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| onAnalysisRun(e) { | ||
| // Execute function provided in the configuration | ||
| /* if (this.analysisClass.execute) { | ||
| this.analysisClass.execute(this.opencgaSession, e.detail.data, e.detail.params); | ||
| } else { | ||
| console.error(`No execute() function provided for analysis: ${this._config.id}`) | ||
| }*/ | ||
|
|
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| // TODO NOTE onAnalysisRun at the moment just forwards the `analysisRun` event fired in opencga-analysis-tool-form | ||
| this.dispatchEvent(new CustomEvent("execute", { | ||
| detail: e.detail | ||
| })); | ||
| } | ||
|
|
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| render() { | ||
| // Check Project exists | ||
| if (!this.opencgaSession.study) { | ||
| return guardPage("No OpenCGA study available to run an analysis. Please login to continue."); | ||
| } | ||
|
|
||
| const userId = this.opencgaSession.user.id; | ||
| const organizationId = this.opencgaSession.organization.id; | ||
| const serverUrl = this.opencgaSession.server.host.replace("/opencga", ""); | ||
| const jupyterLoginUrl = serverUrl + "/jupyter/hub/login"; | ||
| const token = this.opencgaSession.token; | ||
| debugger | ||
| return html` | ||
| <div class="opencga-analysis-tool"> | ||
| </div> | ||
| <div class="m-4"> | ||
| <iframe src="https://test.app.zettagenomics.com/task-6757a/jupyter/hub/login?userId=${userId}&organizationId=${organizationId}&opencgaUrl=${serverUrl}&logoutUrl=https:%2F%2Fwww.google.com&token=${token}" | ||
| width="1440" height="800"> | ||
| </iframe> | ||
| </div> | ||
| `; | ||
| } | ||
|
|
||
| } | ||
|
|
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| customElements.define("jupyter-notebook", JupyterNotebook); |
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