core: workflow manager and imoprt first implementation ready

opencb · Nov 5, 2024 · 3760905 · 3760905
1 parent 4a0e388
commit 3760905
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Showing 14 changed files with 1,254 additions and 170 deletions.
diff --git a/package.json b/package.json
@@ -50,7 +50,7 @@
     "bootstrap-3-typeahead": "^4.0.2",
     "bootstrap-colorpicker": "2.3.6",
     "bootstrap-select": "1.14.0-beta3",
-    "bootstrap-table": "1.21.2",
+    "bootstrap-table": "1.22.6",
     "bootstrap-treeview": "[email protected]:jonmiles/bootstrap-treeview.git#develop",
     "bootstrap-validator": "~0.11.9",
     "clipboard": "^2.0.6",

diff --git a/src/core/clients/opencga/api/Workflow.js b/src/core/clients/opencga/api/Workflow.js
@@ -88,6 +88,16 @@ export default class Workflow extends OpenCGAParentClass {
         return this._get("workflows", null, null, null, "distinct", {field, ...params});
     }
 
+    /** Execute a Nextflow analysis.
+    * @param {Object} data - Repository parameters.
+    * @param {Object} [params] - The Object containing the following optional parameters:
+    * @param {String} [params.study] - Study [[organization@]project:]study where study and project can be either the ID or UUID.
+    * @returns {Promise} Promise object in the form of RestResponse instance.
+    */
+    importWorkflow(data, params) {
+        return this._post("workflows", null, null, null, "import", data, params);
+    }
+
     /** Execute a Nextflow analysis.
     * @param {Object} data - NextFlow run parameters.
     * @param {Object} [params] - The Object containing the following optional parameters:

diff --git a/src/sites/iva/index.html b/src/sites/iva/index.html
@@ -136,7 +136,7 @@
     <!-- build:css[assets/css/vendor.css] -->
 
     <!-- Bs5 css -->
-    <link rel="stylesheet" href="../../../node_modules/bootstrap/dist/css/bootstrap_startbootstrap.min.css">
+    <link rel="stylesheet" href="../../../node_modules/bootstrap/dist/css/bootstrap.min.css">
 
     <!-- bootstrap-select -->
     <link rel="stylesheet" href="../../../node_modules/bootstrap-select/dist/css/bootstrap-select.min.css">

diff --git a/src/webcomponents/commons/analysis/analysis-utils.js b/src/webcomponents/commons/analysis/analysis-utils.js
@@ -139,6 +139,9 @@ export default class AnalysisUtils {
                 ...paramSections,
                 {
                     title: "Job Info",
+                    display: {
+                        className: "p-2"
+                    },
                     elements: [
                         {
                             title: "Job ID",