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Remove xrefs to HsapDv/MmusDv/OlatDv.
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The SSLSO project is now providing mappings to Uberon in the form of a
SSSOM mapping set. The xrefs maintained in Uberon are redundant with
those mappings, and they seem to be less maintained (several Uberon
xrefs currently point to obsoleted HsapDv or MmusDv terms).

We remove those cross-references entirely, so that SSLSO becomes the
sole source of truth for the mappings between Uberon and
HsapDv/MmusDv/OlatDv (as it already is for all the other *Dv
ontologies).
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gouttegd committed Jan 10, 2025
1 parent 0877dc0 commit d503144
Showing 1 changed file with 0 additions and 25 deletions.
25 changes: 0 additions & 25 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -201,12 +201,9 @@ treat-xrefs-as-reverse-genus-differentia: FBdv part_of NCBITaxon:7227
treat-xrefs-as-reverse-genus-differentia: FMA part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: HAO part_of NCBITaxon:7399
treat-xrefs-as-reverse-genus-differentia: HBA part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: HsapDv part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: KUPO part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: MA part_of NCBITaxon:10090
treat-xrefs-as-reverse-genus-differentia: MFO part_of NCBITaxon:8089
treat-xrefs-as-reverse-genus-differentia: MmusDv part_of NCBITaxon:10090
treat-xrefs-as-reverse-genus-differentia: OlatDv part_of NCBITaxon:8089
treat-xrefs-as-reverse-genus-differentia: PBA part_of NCBITaxon:9443
treat-xrefs-as-reverse-genus-differentia: SPD part_of NCBITaxon:6893
treat-xrefs-as-reverse-genus-differentia: TADS part_of NCBITaxon:6939
Expand Down Expand Up @@ -1974,8 +1971,6 @@ xref: BilaDO:0000002
xref: EV:0300001
xref: FBdv:00005289
xref: FMA:72652
xref: HsapDv:0000002
xref: MmusDv:0000002
xref: OGES:000000
xref: OGES:000022
xref: SCTID:296280003
Expand Down Expand Up @@ -2749,8 +2744,6 @@ synonym: "entire lifespan" EXACT []
synonym: "life" EXACT []
synonym: "lifespan" EXACT []
xref: FBdv:00000000
xref: HsapDv:0000001
xref: MmusDv:0000001
xref: ncithesaurus:Life
xref: OGES:000011
is_a: UBERON:0000000 ! processual entity
Expand All @@ -2775,11 +2768,8 @@ xref: BILS:0000105
xref: EFO:0000399
xref: FBdv:00007012
xref: FMA:24120
xref: HsapDv:0000000
xref: MESH:D008018
xref: MmusDv:0000000
xref: ncithesaurus:Developmental_Stage
xref: OlatDv:0000010
xref: PdumDv:0000090
xref: WBls:0000002
xref: XAO:1000000
Expand Down Expand Up @@ -2833,7 +2823,6 @@ xref: BILS:0000107
xref: EFO:0001290
xref: FBdv:00000054
xref: MESH:D002970
xref: MmusDv:0000004
xref: OGES:000015
xref: OGES:000020
xref: PdumDv:0000200
Expand All @@ -2853,8 +2842,6 @@ subset: efo_slim
xref: BilaDO:0000007
xref: BILS:0000108
xref: EFO:0001282
xref: HsapDv:0000006
xref: MmusDv:0000007
xref: OGES:000003
xref: OGES:000016
xref: OGES:000021
Expand Down Expand Up @@ -2883,8 +2870,6 @@ xref: BilaDO:0000008
xref: BILS:0000109
xref: EFO:0001296
xref: FBdv:00005317
xref: HsapDv:0000010
xref: MmusDv:0000013
xref: OGES:000004
xref: OGES:000019
xref: WBls:0000010
Expand All @@ -2902,8 +2887,6 @@ name: neurula stage
def: "Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841]
xref: BilaDO:0000009
xref: BILS:0000110
xref: HsapDv:0000012
xref: MmusDv:0000017
xref: XAO:1000006
is_a: UBERON:0000105 ! life cycle stage
relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio
Expand All @@ -2922,8 +2905,6 @@ def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the int
synonym: "segmentation stage" RELATED []
xref: BilaDO:0000010
xref: BILS:0000111
xref: HsapDv:0000015
xref: MmusDv:0000018
xref: OGES:000005
xref: OGES:000032
xref: Wikipedia:Organogenesis
Expand All @@ -2946,7 +2927,6 @@ xref: BILS:0000112
xref: BTO:0002168
xref: EFO:0001300
xref: EV:0300051
xref: MmusDv:0000043
xref: OGES:000009
xref: XAO:1000010
xref: XtroDO:0000083
Expand All @@ -2967,7 +2947,6 @@ xref: BILS:0000113
xref: EV:0300064
xref: EV:0300070
xref: MIAA:0000403
xref: MmusDv:0000110
xref: OGES:000026
xref: OGES:000027
xref: XAO:1000093
Expand Down Expand Up @@ -119552,7 +119531,6 @@ xref: EVM:2990031
xref: FBdv:00005333
xref: FMA:63631
xref: MIAA:0000399
xref: MmusDv:0000031
xref: OGES:000023
xref: SCTID:367619004
is_a: UBERON:0000105 ! life cycle stage
Expand All @@ -119579,10 +119557,8 @@ synonym: "puggle" NARROW SENSU [NCBITaxon:189497]
synonym: "puggle stage" NARROW SENSU [NCBITaxon:189497]
xref: BTO:0001762
xref: EV:0300037
xref: HsapDv:0000082
xref: http://neurolex.org/wiki/Category\:Infant_organism
xref: http://neurolex.org/wiki/Category\:Newborn_organism
xref: MmusDv:0000096
xref: NIF_Organism:birnlex_695
xref: OGES:000025
xref: Wikipedia:Infant
Expand All @@ -119600,7 +119576,6 @@ synonym: "elderly stage" RELATED [EV:0300123]
synonym: "geriatric" RELATED [EV:0300123]
synonym: "geriatric stage" RELATED [EV:0300123]
xref: EV:0300123
xref: HsapDv:0000093
xref: NCIT:C16268
xref: NIF_Organism:birnlex_691
xref: UMLS:C0001792 {source="ncithesaurus:Elderly"}
Expand Down

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