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Fixes #2896 - Revise textual and logical defs - brush cell #2899

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Fixes #2896 - Revise textual and logical defs - brush cell #2899

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24 changes: 12 additions & 12 deletions src/mappings/fbbt.sssom.tsv
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@@ -1,17 +1,17 @@
#curie_map:
# CL: http://purl.obolibrary.org/obo/CL_
# FBbt: http://purl.obolibrary.org/obo/FBbt_
# ORCID: https://orcid.org/
# obo: http://purl.obolibrary.org/obo/
#mapping_set_id: http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv
#mapping_set_description: Mappings between the Drosophila Anatomy Ontology and foreign ontologies.
# CL: "http://purl.obolibrary.org/obo/CL_"
# FBbt: "http://purl.obolibrary.org/obo/FBbt_"
# ORCID: "https://orcid.org/"
# obo: "http://purl.obolibrary.org/obo/"
#mapping_set_id: "http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv"
#mapping_set_description: "Mappings between the Drosophila Anatomy Ontology and foreign ontologies."
#creator_id:
# - ORCID:0000-0002-1373-1705
# - ORCID:0000-0002-6095-8718
#license: https://creativecommons.org/licenses/by/4.0/
#subject_source: obo:fbbt.owl
#object_source: obo:cl.owl
#mapping_date: 2024-07-12
# - "ORCID:0000-0002-1373-1705"
# - "ORCID:0000-0002-6095-8718"
#license: "https://creativecommons.org/licenses/by/4.0/"
#subject_source: "obo:fbbt.owl"
#object_source: "obo:cl.owl"
#mapping_date: "2024-07-12"
subject_id subject_label predicate_id object_id object_label mapping_justification
FBbt:00000092 primordial germ cell semapv:crossSpeciesExactMatch CL:0000301 pole cell semapv:ManualMappingCuration
FBbt:00000124 epithelial cell semapv:crossSpeciesExactMatch CL:0000066 epithelial cell semapv:ManualMappingCuration
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12 changes: 6 additions & 6 deletions src/mappings/zfa.sssom.tsv
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Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
#curie_map:
# CL: http://purl.obolibrary.org/obo/CL_
# ZFA: http://purl.obolibrary.org/obo/ZFA_
#mapping_set_id: http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv
#license: https://creativecommons.org/licenses/by/3.0/
#subject_source: http://purl.obolibrary.org/obo/zfa.owl
#object_source: http://purl.obolibrary.org/obo/cl.owl
# CL: "http://purl.obolibrary.org/obo/CL_"
# ZFA: "http://purl.obolibrary.org/obo/ZFA_"
#mapping_set_id: "http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv"
#license: "https://creativecommons.org/licenses/by/3.0/"
#subject_source: "http://purl.obolibrary.org/obo/zfa.owl"
#object_source: "http://purl.obolibrary.org/obo/cl.owl"
subject_id subject_label predicate_id object_id object_label mapping_justification
ZFA:0000003 adaxial cell semapv:crossSpeciesExactMatch CL:0007016 adaxial cell semapv:UnspecifiedMatching
ZFA:0000084 yolk semapv:crossSpeciesExactMatch CL:0000428 yolk cell semapv:UnspecifiedMatching
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11 changes: 7 additions & 4 deletions src/ontology/cl-edit.owl
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Expand Up @@ -3175,6 +3175,7 @@ Declaration(Class(obo:GO_0070483))
Declaration(Class(obo:GO_0097729))
Declaration(Class(obo:GO_0098535))
Declaration(Class(obo:GO_0098594))
Declaration(Class(obo:GO_0151001))
Declaration(Class(obo:GO_1990573))
Declaration(Class(obo:NCBITaxon_4896))
Declaration(Class(obo:NCBITaxon_6157))
Expand Down Expand Up @@ -15944,16 +15945,18 @@ SubClassOf(obo:CL_0002203 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000127

# Class: obo:CL_0002204 (brush cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:15817800") obo:IAO_0000115 obo:CL_0002204 "A cell type found in the gastrointestinal and respiratory tracts that is characterized by the presence of a tuft of blunt, squat microvilli (120-140 per cell). Function of this cell type is not known.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:15817800") Annotation(oboInOwl:hasDbXref "PMID:36704202") obo:IAO_0000115 obo:CL_0002204 "An epithelial cell found in various organs, including the gastrointestinal and respiratory tracts, characterized by a tuft of 120-140 blunt microvilli on its apical surface. This cell exhibits diverse functions depending on its location, which includes chemosensation, initiation of immune responses, contribution to mucociliary clearance, and defense against parasites.")
AnnotationAssertion(terms:contributor obo:CL_0002204 <https://orcid.org/0000-0003-1980-3228>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002204 "2010-09-02T02:28:53Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002204 "FMA:67978")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "caveolated cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "fibrillovesicular cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "caveolated cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "fibrillovesicular cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "multivesicular cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "tuft cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "tuft cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "peculiar cell")
AnnotationAssertion(rdfs:label obo:CL_0002204 "brush cell")
SubClassOf(obo:CL_0002204 obo:CL_0002076)
SubClassOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0151001))

# Class: obo:CL_0002205 (brush cell of lobular bronchiole)

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4 changes: 2 additions & 2 deletions src/ontology/components/cellxgene_subset.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/cl/components/cellxgene_subset.owl>
<http://purl.obolibrary.org/obo/cl/releases/2025-01-07/components/cellxgene_subset.owl>
Annotation(owl:versionInfo "2025-01-07")
<http://purl.obolibrary.org/obo/cl/releases/2025-01-14/components/cellxgene_subset.owl>
Annotation(owl:versionInfo "2025-01-14")

Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000000>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000001>))
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3 changes: 2 additions & 1 deletion src/ontology/imports/go_terms.txt
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Expand Up @@ -18,4 +18,5 @@ GO:0050893
GO:0001552
GO:0019626
GO:0098535
GO:0046697
GO:0046697
GO:0151001
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