Fixes #2896

- Revised textual definition
- Added a link to tuft
- Added supporting references

src/mappings/fbbt.sssom.tsv

@@ -1,17 +1,17 @@
 #curie_map:
-#  CL: http://purl.obolibrary.org/obo/CL_
-#  FBbt: http://purl.obolibrary.org/obo/FBbt_
-#  ORCID: https://orcid.org/
-#  obo: http://purl.obolibrary.org/obo/
-#mapping_set_id: http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv
-#mapping_set_description: Mappings between the Drosophila Anatomy Ontology and foreign ontologies.
+#  CL: "http://purl.obolibrary.org/obo/CL_"
+#  FBbt: "http://purl.obolibrary.org/obo/FBbt_"
+#  ORCID: "https://orcid.org/"
+#  obo: "http://purl.obolibrary.org/obo/"
+#mapping_set_id: "http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv"
+#mapping_set_description: "Mappings between the Drosophila Anatomy Ontology and foreign ontologies."
 #creator_id:
-#  - ORCID:0000-0002-1373-1705
-#  - ORCID:0000-0002-6095-8718
-#license: https://creativecommons.org/licenses/by/4.0/
-#subject_source: obo:fbbt.owl
-#object_source: obo:cl.owl
-#mapping_date: 2024-07-12
+#  - "ORCID:0000-0002-1373-1705"
+#  - "ORCID:0000-0002-6095-8718"
+#license: "https://creativecommons.org/licenses/by/4.0/"
+#subject_source: "obo:fbbt.owl"
+#object_source: "obo:cl.owl"
+#mapping_date: "2024-07-12"
 subject_id	subject_label	predicate_id	object_id	object_label	mapping_justification
 FBbt:00000092	primordial germ cell	semapv:crossSpeciesExactMatch	CL:0000301	pole cell	semapv:ManualMappingCuration
 FBbt:00000124	epithelial cell	semapv:crossSpeciesExactMatch	CL:0000066	epithelial cell	semapv:ManualMappingCuration

src/mappings/zfa.sssom.tsv

@@ -1,10 +1,10 @@
 #curie_map:
-#  CL: http://purl.obolibrary.org/obo/CL_
-#  ZFA: http://purl.obolibrary.org/obo/ZFA_
-#mapping_set_id: http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv
-#license: https://creativecommons.org/licenses/by/3.0/
-#subject_source: http://purl.obolibrary.org/obo/zfa.owl
-#object_source: http://purl.obolibrary.org/obo/cl.owl
+#  CL: "http://purl.obolibrary.org/obo/CL_"
+#  ZFA: "http://purl.obolibrary.org/obo/ZFA_"
+#mapping_set_id: "http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv"
+#license: "https://creativecommons.org/licenses/by/3.0/"
+#subject_source: "http://purl.obolibrary.org/obo/zfa.owl"
+#object_source: "http://purl.obolibrary.org/obo/cl.owl"
 subject_id	subject_label	predicate_id	object_id	object_label	mapping_justification
 ZFA:0000003	adaxial cell	semapv:crossSpeciesExactMatch	CL:0007016	adaxial cell	semapv:UnspecifiedMatching
 ZFA:0000084	yolk	semapv:crossSpeciesExactMatch	CL:0000428	yolk cell	semapv:UnspecifiedMatching

src/ontology/cl-edit.owl

@@ -3175,6 +3175,7 @@ Declaration(Class(obo:GO_0070483))
 Declaration(Class(obo:GO_0097729))
 Declaration(Class(obo:GO_0098535))
 Declaration(Class(obo:GO_0098594))
+Declaration(Class(obo:GO_0151001))
 Declaration(Class(obo:GO_1990573))
 Declaration(Class(obo:NCBITaxon_4896))
 Declaration(Class(obo:NCBITaxon_6157))
@@ -15944,16 +15945,18 @@ SubClassOf(obo:CL_0002203 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000127
 
 # Class: obo:CL_0002204 (brush cell)
 
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:15817800") obo:IAO_0000115 obo:CL_0002204 "A cell type found in the gastrointestinal and respiratory tracts that is characterized by the presence of a tuft of blunt, squat microvilli (120-140 per cell). Function of this cell type is not known.")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:15817800") Annotation(oboInOwl:hasDbXref "PMID:36704202") obo:IAO_0000115 obo:CL_0002204 "An epithelial cell found in various organs, including the gastrointestinal and respiratory tracts, characterized by a tuft of 120-140 blunt microvilli on its apical surface. This cell exhibits diverse functions depending on its location, which includes chemosensation, initiation of immune responses, contribution to mucociliary clearance, and defense against parasites.")
 AnnotationAssertion(terms:contributor obo:CL_0002204 <https://orcid.org/0000-0003-1980-3228>)
 AnnotationAssertion(oboInOwl:creation_date obo:CL_0002204 "2010-09-02T02:28:53Z"^^xsd:dateTime)
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002204 "FMA:67978")
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "caveolated cell")
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "fibrillovesicular cell")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "caveolated cell")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "fibrillovesicular cell")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "multivesicular cell")
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "tuft cell")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "tuft cell")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "peculiar cell")
 AnnotationAssertion(rdfs:label obo:CL_0002204 "brush cell")
 SubClassOf(obo:CL_0002204 obo:CL_0002076)
+SubClassOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0151001))
 
 # Class: obo:CL_0002205 (brush cell of lobular bronchiole)
 

src/ontology/components/cellxgene_subset.owl

@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/cl/components/cellxgene_subset.owl>
-<http://purl.obolibrary.org/obo/cl/releases/2025-01-07/components/cellxgene_subset.owl>
-Annotation(owl:versionInfo "2025-01-07")
+<http://purl.obolibrary.org/obo/cl/releases/2025-01-14/components/cellxgene_subset.owl>
+Annotation(owl:versionInfo "2025-01-14")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000001>))

src/ontology/imports/go_terms.txt

@@ -18,4 +18,5 @@ GO:0050893
 GO:0001552
 GO:0019626
 GO:0098535
-GO:0046697
+GO:0046697
+GO:0151001