Skip to content

Modules: fix bump-versions: only append module name if it is a dir and contains main.nf #8433

Modules: fix bump-versions: only append module name if it is a dir and contains main.nf

Modules: fix bump-versions: only append module name if it is a dir and contains main.nf #8433

Triggered via pull request January 7, 2025 14:03
Status Cancelled
Total duration 4m 51s
Artifacts 29

pytest.yml

on: pull_request
Matrix: setup
Get test file matrix
4s
Get test file matrix
Matrix: test
coverage
0s
coverage
Fit to window
Zoom out
Zoom in

Annotations

50 errors and 86 warnings
Run pipelines/test_rocrate.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run test_subworkflows.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run test_subworkflows.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_cli.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run test_cli.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_pipelines.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run test_pipelines.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_lint_utils.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run test_lint_utils.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_test_utils.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_utils.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run test_utils.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_list.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run modules/test_list.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_update.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run modules/test_update.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_modules.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run test_modules.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_remove.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run subworkflows/test_remove.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_components.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run test_components.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_patch.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run subworkflows/test_patch.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_install.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run modules/test_install.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-3384' exists
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Get test file matrix
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
setup (3.8, ubuntu-20.04)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
setup (3.8, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
setup (3.12, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_unchanged.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_files_unchanged.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_configs.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_configs.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_ci.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_ci.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_plugin_includes.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_plugin_includes.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_info.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_info.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_template_strings.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_template_strings.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_remove.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_remove.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_create.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_rocrate.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_subworkflows.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_cli.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_pipelines.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_lint_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_update.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_modules.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_remove.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_components.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_patch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_install.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
coverage_modules__test_bump_versions.py
5.94 KB
coverage_modules__test_create.py
5.89 KB
coverage_modules__test_info.py
6.02 KB
coverage_modules__test_remove.py
5.97 KB
coverage_pipelines__lint__test_actions_awsfulltest.py
6.64 KB
coverage_pipelines__lint__test_actions_awstest.py
6.64 KB
coverage_pipelines__lint__test_actions_ci.py
6.64 KB
coverage_pipelines__lint__test_actions_schema_validation.py
6.64 KB
coverage_pipelines__lint__test_configs.py
6.65 KB
coverage_pipelines__lint__test_files_exist.py
6.66 KB
coverage_pipelines__lint__test_files_unchanged.py
6.66 KB
coverage_pipelines__lint__test_merge_markers.py
6.64 KB
coverage_pipelines__lint__test_modules_json.py
6.65 KB
coverage_pipelines__lint__test_multiqc_config.py
6.72 KB
coverage_pipelines__lint__test_nextflow_config.py
6.69 KB
coverage_pipelines__lint__test_nfcore_yml.py
6.64 KB
coverage_pipelines__lint__test_plugin_includes.py
6.64 KB
coverage_pipelines__lint__test_template_strings.py
6.95 KB
coverage_pipelines__lint__test_version_consistency.py
6.7 KB
coverage_pipelines__test_bump_version.py
5.43 KB
coverage_pipelines__test_create.py
5.36 KB
coverage_pipelines__test_create_app.py
5.38 KB
coverage_pipelines__test_create_logo.py
5.36 KB
coverage_pipelines__test_download.py
5.74 KB
coverage_pipelines__test_lint.py
6.99 KB
coverage_pipelines__test_list.py
5.22 KB
coverage_pipelines__test_params_file.py
5.44 KB
coverage_pipelines__test_refgenie.py
5.23 KB
coverage_pipelines__test_rocrate.py
5.43 KB