Update versions in snaps for trimgalore

nf-core · Jan 8, 2025 · 1eebe23 · 1eebe23
1 parent 46bc8c6
commit 1eebe23
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Showing 10 changed files with 52 additions and 31 deletions.
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
@@ -40,7 +40,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_SALMON_INDEX": {
                     "untar": 1.34
@@ -225,7 +226,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -1493,4 +1495,4 @@
         },
         "timestamp": "2024-12-03T12:39:04.406597796"
     }
-}
+}
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
@@ -40,7 +40,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_SALMON_INDEX": {
                     "untar": 1.34
@@ -219,7 +220,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -1443,4 +1445,4 @@
         },
         "timestamp": "2024-12-03T17:25:47.179044158"
     }
-}
+}
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
@@ -38,7 +38,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_HISAT2_INDEX": {
                     "untar": 1.34
@@ -219,7 +220,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -1343,4 +1345,4 @@
         },
         "timestamp": "2024-12-03T17:38:50.917761241"
     }
-}
+}
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
@@ -50,7 +50,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -313,7 +314,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_SALMON_INDEX": {
                     "untar": 1.34
@@ -363,4 +365,4 @@
         },
         "timestamp": "2024-12-03T17:49:02.306667165"
     }
-}
+}
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
@@ -122,7 +122,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -1240,7 +1241,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_SALMON_INDEX": {
                     "untar": 1.34
@@ -1302,4 +1304,4 @@
         },
         "timestamp": "2024-12-03T17:57:59.273391037"
     }
-}
+}
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
@@ -128,7 +128,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -1454,7 +1455,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_SALMON_INDEX": {
                     "untar": 1.34
@@ -1516,4 +1518,4 @@
         },
         "timestamp": "2024-12-03T18:13:56.979730403"
     }
-}
+}
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
@@ -44,7 +44,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -386,7 +387,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_SALMON_INDEX": {
                     "untar": 1.34
@@ -436,4 +438,4 @@
         },
         "timestamp": "2024-12-03T19:46:22.63337267"
     }
-}
+}
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
@@ -37,7 +37,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_SALMON_INDEX": {
                     "untar": 1.34
@@ -167,7 +168,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -821,4 +823,4 @@
         },
         "timestamp": "2024-12-03T18:20:07.800214285"
     }
-}
+}
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
@@ -119,7 +119,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -1330,7 +1331,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UNTAR_RSEM_INDEX": {
                     "untar": 1.34
@@ -1395,4 +1397,4 @@
         },
         "timestamp": "2024-12-03T18:38:21.04782292"
     }
-}
+}
diff --git a/tests/umi.nf.test.snap b/tests/umi.nf.test.snap
@@ -116,7 +116,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -1620,7 +1621,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "TXIMETA_TXIMPORT": {
                     "bioconductor-tximeta": "1.20.1"
@@ -2788,7 +2790,8 @@
                 },
                 "TRIMGALORE": {
                     "trimgalore": "0.6.10",
-                    "cutadapt": 4.9
+                    "cutadapt": 4.9,
+                    "pigz": 2.8
                 },
                 "UMITOOLS_EXTRACT": {
                     "umitools": "1.1.5"
@@ -2859,4 +2862,4 @@
         },
         "timestamp": "2024-12-19T23:28:01.570835895"
     }
-}
+}