Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add wget wait time for retries #325

Open
wants to merge 4 commits into
base: dev
Choose a base branch
from
Open

Add wget wait time for retries #325

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
8ec2d93
Merge pull request #286 from nf-core/dev
drpatelh Feb 29, 2024
8c5104c
feat: add wget retry wait time
maxibor Nov 29, 2024
5160bd4
Merge remote-tracking branch 'upstream/dev' into wget_wait
maxibor Nov 29, 2024
ef399e8
doc: changelog update
maxibor Nov 29, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [PR #320](https://github.com/nf-core/fetchngs/pull/320) - Update module multiqc_mappings_config and sratools/prefetch for TES compliance
- [PR #320](https://github.com/nf-core/fetchngs/pull/320) - Refactor workflow tests
- [PR #323](https://github.com/nf-core/fetchngs/pull/323) - Template update for nf-core/tools v3.0.2
- [PR #325](https://github.com/nf-core/fetchngs/pull/325) - Add wget wait time for retries

### Software dependencies

Expand Down
2 changes: 1 addition & 1 deletion modules/local/sra_fastq_ftp/nextflow.config
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
process {
withName: 'SRA_FASTQ_FTP' {
ext.args = '-t 5 -nv -c -T 60'
ext.args = '-t 5 -nv -w 5 --random-wait -c -T 60'
publishDir = [
[
path: { "${params.outdir}/fastq" },
Expand Down
Loading