Update nextclade workflow for new clades B.1.21, B.1.22, C.1.1

Relates to mpxv-lineages/lineage-designation#37
nextstrain · Apr 17, 2024 · 8e53782 · 8e53782
1 parent 373d546
commit 8e53782
Showing 1 changed file with 4 additions and 9 deletions.
diff --git a/nextclade/README.md b/nextclade/README.md
@@ -34,15 +34,10 @@ nextstrain view auspice/
 - [ ] Create branch there, copy datasets, commit, push, open PR:
 
 ```bash
-cd ../../nextclade_data
-git checkout master
-git pull
-git checkout -b mpox-update
-cp -r ../monkeypox/nextclade/datasets/ data/nextstrain/mpox
-git add data/nextstrain/mpox
-git commit -m "Update mpox dataset"
-git push -u origin mpox-update
-gh pr create
+cd ~/code
+cp mpox/nextclade/datasets/all-clades/tree.json nextclade_data/data/nextstrain/mpox/all-clades/tree.json
+cp mpox/nextclade/datasets/clade-iib/tree.json nextclade_data/data/nextstrain/mpox/clade_iib/tree.json
+p mpox/nextclade/datasets/lineage-b.1/tree.json nextclade_data/data/nextstrain/mpox/lineage-b.1/tree.json
 ```
 
 ## Configuration