fixup: nextclade call

nextstrain · Feb 13, 2024 · ad0b0dc · ad0b0dc
1 parent 3520ead
commit ad0b0dc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/phylogenetic/rules/prepare_sequences_E.smk b/phylogenetic/rules/prepare_sequences_E.smk
@@ -50,7 +50,7 @@ rule align_and_extract_E:
         min_length = config['filter']['E_min_length'],
     shell:
         """
-        nextclade3 run \
+        nextclade run \
            -j 2 \
            --input-ref {input.reference} \
            --output-fasta {output.sequences} \