fixup: alignment params

nextstrain · Jan 26, 2024 · 1ee5ac5 · 1ee5ac5
1 parent 544e877
commit 1ee5ac5
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Showing 4 changed files with 9 additions and 4 deletions.
diff --git a/nextclade_data/denv1/pathogen.json b/nextclade_data/denv1/pathogen.json
@@ -1,6 +1,8 @@
 {
   "alignmentParams": {
-    "minSeedCover": 0.01
+    "minSeedCover": 0.1,
+    "minLength": 1000,
+    "mismatchesAllowed": 2000
   },
   "attributes": {
     "name": "Dengue virus DENV1 dataset",

diff --git a/nextclade_data/denv2/pathogen.json b/nextclade_data/denv2/pathogen.json
@@ -1,6 +1,7 @@
 {
   "alignmentParams": {
-    "minSeedCover": 0.01
+    "minSeedCover": 0.1,
+    "minLength": 1000
   },
   "attributes": {
     "name": "Dengue virus DENV2 dataset",

diff --git a/nextclade_data/denv3/pathogen.json b/nextclade_data/denv3/pathogen.json
@@ -1,6 +1,7 @@
 {
   "alignmentParams": {
-    "minSeedCover": 0.01
+    "minSeedCover": 0.1,
+    "minLength": 1000
   },
   "attributes": {
     "name": "Dengue virus DENV3 dataset",

diff --git a/nextclade_data/denv4/pathogen.json b/nextclade_data/denv4/pathogen.json
@@ -1,6 +1,7 @@
 {
   "alignmentParams": {
-    "minSeedCover": 0.01
+    "minSeedCover": 0.1,
+    "minLength": 1000
   },
   "attributes": {
     "name": "Dengue virus DENV4 dataset",