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completed the first draft of the whole page - many little ToDos remai…
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…n to make things more smooth, but the sections are now all complete
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nevrome committed Oct 15, 2023
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Expand Up @@ -78,7 +78,7 @@ The origin vector summary can also be applied for individual parameter permutati
origin_vectors <- mobest::determine_origin_vectors(search_product, search_time)
```

The resulting object of type `mobest_originvectors` features one row for each vector with the following variables:
The resulting object of type `mobest_originvectors` features one row for each vector with the following variables. Note that many variables here reflect mean values in this case, as `determine_origin_vectors()` can summarize information across parameter permutations.

|Column |Description |
|:--------------------|:-----------|
Expand All @@ -87,24 +87,23 @@ The resulting object of type `mobest_originvectors` features one row for each ve
|dependent_var_id |Identifier of the dependent variable|
|kernel_setting_id |Identifier of the kernel setting permutation|
|pred_grid_id |Identifier of the spatiotemporal prediction grid|
|dsx |Kernel lengthscale parameter on the spatial x axis|
|dsy |Kernel lengthscale parameter on the spatial y axis|
|dt |Kernel lengthscale parameter on the temporal axis|
|g |Kernel nugget parameter|
|field_id |Identifier of the spatiotemporal prediction point|
|field_x |Spatial x axis coordinate of the prediction point|
|field_y |Spatial y axis coordinate of the prediction point|
|field_z |Temporal coordinate (age) of the prediction point|
|field_geo_id |Identifier of the spatial prediction point|
|field_mean |Mean value predicted by the GPR model for the dependent variable|
|field_sd |Uncertainty predicted by the GPR model for the dependent variable|
|search_id |Identifier of the search sample|
|search_x |Spatial x axis coordinate of the search sample|
|search_y |Spatial y axis coordinate of the search sample|
|search_z |Temporal coordinate (age) of the search sample|
|search_time |Search time as provided by the user in `locate()`'s `search_time` argument|
|search_measured |Genetic coordinate of the search sample in the dependent variable space|
|probability |Probability density for `search_measured` given all other parameters|
|probability |Probability density calculated in `locate()`|
|ov_x |Length of the origin vector in x direction|
|ov_y |Length of the origin vector in y direction|
|ov_dist |Length of the origin vector in space (Euclidean distance)|
|ov_dist_se |Standard error of the mean of all vector lengths|
|ov_dist_sd |Standard deviation of all vector lengths|
|ov_angle_deg |Direction of the origin vector as an angle in degree (0-360°)|

One way of making use of this object is by highlighting the points of maximal similarity probability in the map plot.

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