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[REF] Update SessionPath -> SessionFilePath #242

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@surchs surchs commented Nov 11, 2024

Note: I could not get the test suite to run locally, this seems related / identical to e.g.: https://github.com/neurodatascience/cohort_creator/actions/runs/11661670644/job/32466434137#step:8:29

Summary by Sourcery

Rename 'SessionPath' to 'SessionFilePath' throughout the codebase to improve clarity and consistency, and update related test cases accordingly.

Enhancements:

  • Rename 'SessionPath' to 'SessionFilePath' across the codebase for clarity and consistency.

Tests:

  • Update test assertions to reflect the renaming of 'SessionPath' to 'SessionFilePath'.

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sourcery-ai bot commented Nov 11, 2024

Reviewer's Guide by Sourcery

This PR implements a column name change from 'SessionPath' to 'SessionFilePath' across the codebase. The change is straightforward, involving updates to column names in DataFrame operations, test assertions, and file path handling functions.

Class diagram for DataFrame column update

classDiagram
    class DataFrame {
        +DatasetID
        +SubjectID
        +SessionID
        +SessionFilePath
    }
    note for DataFrame "Updated column name from 'SessionPath' to 'SessionFilePath'"
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File-Level Changes

Change Details Files
Renamed 'SessionPath' column to 'SessionFilePath' in DataFrame operations
  • Updated column name in DataFrame initialization
  • Modified column name in path construction and assignment
  • Updated column name check in participant listing validation
  • Changed column reference in dataset name extraction logic
cohort_creator/_utils.py
docs/visualize_neurobagel.py
Updated test assertions to reflect the new column name
  • Modified column name assertion in DataFrame structure test
tests/test_utils.py

Assessment against linked issues

Issue Objective Addressed Explanation
#240 Update column name from 'SessionPath' to 'SessionFilePath' to match the new schema

Possibly linked issues


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Hey @surchs - I've reviewed your changes - here's some feedback:

Overall Comments:

  • Please investigate why you cannot run the test suite locally and fix that issue. Being able to run and verify tests locally is important for maintaining code quality, even for straightforward changes like this one.
Here's what I looked at during the review
  • 🟢 General issues: all looks good
  • 🟢 Security: all looks good
  • 🟢 Testing: all looks good
  • 🟢 Complexity: all looks good
  • 🟢 Documentation: all looks good

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Update to new schema for neurobagel query results
1 participant