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Update to new schema for neurobagel query results #240

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surchs opened this issue Nov 11, 2024 · 0 comments · May be fixed by #242
Open

Update to new schema for neurobagel query results #240

surchs opened this issue Nov 11, 2024 · 0 comments · May be fixed by #242

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@surchs
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surchs commented Nov 11, 2024

Currently the tool expects a column called SessionPath:

cohort_creator/cohort_creator/_utils.py

Line 43 in 93ec63e

"SessionPath": [],

But the query tool has since renamed this column to SessionFilePath: https://github.com/neurobagel/neurobagel_examples/blob/0a86d832fc362114ca3d66f53f05eb86fe824a4a/query-tool-results/participant-level-results.tsv

So we should update the expected names here as well
surchs added a commit to surchs/cohort_creator that referenced this issue Nov 11, 2024
@surchs
[REF] Update SessionPath -> SessionFilePath
4aa1136 
Closes neurodatascience#240
@surchs surchs linked a pull request Nov 11, 2024 that will close this issue
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[REF] Update SessionPath -> SessionFilePath surchs/cohort_creator
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@surchs