Connecting up Phase 1 Refactor Work to Allow Passage Through to Categorization Page

[jarmoza]

This PR represents a kind of glue between the two phases of our store refactor for the annotation tool. The overall goal was to produce a version of the tool that is working up to the categorization page.

As such there are a number of varied tasks which are described in the issues below. Generally, they cover:

1. The addition of store fields/methods that were not added during the initial refactor for various reasons
2. Nominal refactor changes like name changes
3. Ensuring proper initialization of store fields and loading of the data table/data dictionary
4. Further adapting navigation/page accessibility code
5. Updating the pages and their components as needed to ensure the new workflow functions (upload table -> upload dictionary (optional, but not before data table upload) -> go to categorization page, etc.)
6. Components functioning at least to the point where they don't break the app when loaded on their respective page.

The specific issues covered are listed in #251, but the relevant ones are re-listed below for convenience.

• Transition refactored store to Vuex syntax #300
• switch over to the refactored store #307
• can we launch a partially complete app #308
• Store fields/methods and initialization missing from initial refactor work #313
• Adapt data dictionary and data table upload/store functionality for refactor on Index page #314
• Adapt navbar/next button and page accessibility status for initial refactor work #315

There remain several bugs, the consequence of which mostly do not interfere with the general goal of a working app up to the categorization page. They are:

• Data dictionary loading requires case-sensitive keys - causing issue on landing/categorization pages #316
• Ironing out navbar behavior for Phase 1 refactor #317
• Disabled file selector 'button' is smaller than enabled version #320

[jarmoza]

@surchs Standby for check/fix on failed component test(s)

[jarmoza]

@surchs Could you put an eye on https://github.com/neurobagel/annotation_tool/blob/jarmoza-308/cypress/component/category-select-table.cy.js ? I've been scratching my head as to why this is failing.

[Edit: @surchs Nevermind. I figured it out. The new colorInfo of the store state needed to be mocked. It was odd because the error was occurring past the test itself.]

[surchs]

Glad you resolved the issue @jarmoza, sorry it took me so long to check it out. Would you mind pushing your fix?

[jarmoza]

This PR will be closed without merge once all tasks in #251 for phase 1 refactor are complete.

[jarmoza]

I am closing this now that the Phase 1 refactor work has been completed by PRs separating (and improving upon) this one - last one is #330 for reference.