Merge pull request #410 from yarikoptic/enh-codespell

codespell: workflow, config, typos fixed

.codespellrc

@@ -0,0 +1,4 @@
+[codespell]
+skip = .git,*.pdf,*.svg,package-lock.json
+# 
+# ignore-words-list = 

.github/workflows/codespell.yml

@@ -0,0 +1,19 @@
+---
+name: Codespell
+
+on:
+  push:
+    branches: [master]
+  pull_request:
+    branches: [master]
+
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Codespell
+        uses: codespell-project/actions-codespell@v1

README.md

@@ -36,7 +36,7 @@ npm run generate
 npm run deploy
 ```
 
-See the [Nuxt documention](https://nuxtjs.org/deployments/github-pages/) for more details.
+See the [Nuxt documentation](https://nuxtjs.org/deployments/github-pages/) for more details.
 
 ## Special Directories
 

components/category-select-table.vue

@@ -71,7 +71,7 @@
                     // 1. Save the newly selected category, if given
                     this.selectedCategory = p_row[0].category;
 
-                    // 2. Tell the parent page about the category selction
+                    // 2. Tell the parent page about the category selection
                     this.$emit("category-select", { category: this.selectedCategory });
                 }
             },

components/file-selector.vue

@@ -77,7 +77,7 @@
 
                         complete: results => {
 
-                            // I. Returned results inlcude data and filename
+                            // I. Returned results include data and filename
                             const myJson = {
 
                                 data: results.data,

cypress/fixtures/examples/good/ds003653_participant.json

@@ -33,11 +33,11 @@
     },
     "medload": {
         "Description": "reflects the number of dosage of psychotropic medications taken by participants. Higher numbers correspond to more medications and/or higher medication dosage ",
-        "Units": "arbitraty units" 
+        "Units": "arbitrary units" 
     },
     "iq": {
         "Description": "IQ derived based on the NART assessment.",
-        "Units": "arbitraty units"
+        "Units": "arbitrary units"
     },
     "session": {
         "Description": "scanning session",

cypress/fixtures/examples/good/example.json

@@ -20,11 +20,11 @@
 	},
 	"medload": {
 		"Description": "reflects the number of dosage of psychotropic medications taken by participants. Higher numbers correspond to more medications and/or higher medication dosage ",
-		"Units": "arbitraty units"
+		"Units": "arbitrary units"
 	},
 	"iq": {
 		"Description": "IQ derived based on the NART assessment.",
-		"Units": "arbitraty units"
+		"Units": "arbitrary units"
 	},
 	"stroop": {
 		"Description": "Reaction time in a Stroop task experiment.",

cypress/fixtures/examples/interesting/ds001919_participant.tsv

@@ -105,12 +105,12 @@ sub-mniS06	M	33	2019-03-05	mni	"Montreal Neurological Institute, McGill Universi
 sub-mniS07	F	40	2019-03-07	mni	"Montreal Neurological Institute, McGill University"	Siemens	Prisma-fit	64ch+spine	VE11C	"Benjamin De Leener, Julien Doyon"
 sub-mniS08	F	28	2019-03-12	mni	"Montreal Neurological Institute, McGill University"	Siemens	Prisma-fit	64ch+spine	VE11C	"Benjamin De Leener, Julien Doyon"
 sub-mniS09	F	42	2019-03-12	mni	"Montreal Neurological Institute, McGill University"	Siemens	Prisma-fit	64ch+spine	VE11C	"Benjamin De Leener, Julien Doyon"
-sub-mountSinai01	M	40	2019-03-12	mountSinai	"BMEII (formely TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
-sub-mountSinai02	M	26	2019-03-12	mountSinai	"BMEII (formely TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
-sub-mountSinai03	M	37	2019-03-05	mountSinai	"BMEII (formely TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
-sub-mountSinai04	M	37	2019-03-25	mountSinai	"BMEII (formely TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
-sub-mountSinai05	M	31	2019-03-25	mountSinai	"BMEII (formely TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
-sub-mountSinai06	M	31	2019-03-25	mountSinai	"BMEII (formely TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
+sub-mountSinai01	M	40	2019-03-12	mountSinai	"BMEII (formerly TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
+sub-mountSinai02	M	26	2019-03-12	mountSinai	"BMEII (formerly TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
+sub-mountSinai03	M	37	2019-03-05	mountSinai	"BMEII (formerly TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
+sub-mountSinai04	M	37	2019-03-25	mountSinai	"BMEII (formerly TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
+sub-mountSinai05	M	31	2019-03-25	mountSinai	"BMEII (formerly TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
+sub-mountSinai06	M	31	2019-03-25	mountSinai	"BMEII (formerly TMII), Icahn School of Medicine at Mount Sinai, New York, NY USA"	Siemens	Skyra	Spine_32	VE11C	"J. Xu, A. Seifert, J-W. Kim"
 sub-mpicbs01	F	29	2019-03-26	mpicbs	Max Planck Institute for Human Cognitive and Brain Sciences	Siemens	Prisma-fit	64ch+spine	VE11C	"F. Eippert, T. Leutritz, N. Weiskopf"
 sub-mpicbs02	F	30	2019-04-04	mpicbs	Max Planck Institute for Human Cognitive and Brain Sciences	Siemens	Prisma-fit	64ch+spine	VE11C	"F. Eippert, T. Leutritz, N. Weiskopf"
 sub-mpicbs03	M	26	2019-04-04	mpicbs	Max Planck Institute for Human Cognitive and Brain Sciences	Siemens	Prisma-fit	64ch+spine	VE11C	"F. Eippert, T. Leutritz, N. Weiskopf"

cypress/fixtures/examples/interesting/ds002134_participant.json

@@ -29,7 +29,7 @@
     "Description": "Animal weight in grams"
   },
 "Temperature": {
-    "Description": "Animal rectal temperature in Celcius"
+    "Description": "Animal rectal temperature in Celsius"
   },
 "DOB": {
     "Description": "Animal date of birth"

pages/categorization.vue

@@ -295,7 +295,7 @@
                                         }
                                     }
 
-                                    // b. Save the description from the json file colum entry
+                                    // b. Save the description from the json file column entry
                                     this.columnToCategoryTable[index].description = descriptionStr;
                                 }
                             }

pages/download.vue

@@ -121,7 +121,7 @@
 
             downloadAnnotatedData() {
 
-                // 1. Format the annotated table into propietary JSON format
+                // 1. Format the annotated table into proprietary JSON format
                 const jsonData = this.transformAnnotatedTableToJSON();
 
                 // 2. Open file dialog to prompt the user to name it and

test_contributions.md

@@ -53,7 +53,7 @@ This file contains functions that are linked to the Cypress object. The idea is
 
 _assertNextPageAccess_
 
-Since each page in the annotation tool uses a standard naming convention for the nav and next page buttons, this function is a quick means of determining of the page's requirements for proceeeding to the next one have been met.
+Since each page in the annotation tool uses a standard naming convention for the nav and next page buttons, this function is a quick means of determining of the page's requirements for proceeding to the next one have been met.
 
 _datasetMeetsTestCriteria_