SNT-4.1.15

New:

• Improved saving mechanism (#159):
  • Ctrl + S can be used to save traces from tracing canvas
  • Ctrl + Shift + S can be used to create timestamped backups of current data. These can be restored later on using the new File -> Restore Snapshot Backup command. Note that tracings need to be saved at least once before snapshot backups can be created.
  • Better detection of unsaved changes
  • Improved filename suggestions in saving prompts
• 'Reveal Directory' commands to facilitate file browsing in the native OS
• Plots now indicate known units in axes
• Added 'Sholl BI' to the list of supported metrics (details)

Improved/Fixed:

• Fixed Broken access to NeuroMorpho.org database
• Fixed Quick Measure command reporting NaNs (#150)
• Fixed some of the issues (not all(!)) described in #148
• Updated dependencies (#149, #151 , #152 , #154 , #157, #160, #161)

Full Changelog: SNT-4.1.14...SNT-4.1.15
Compiled artifact (without dependencies): SNT-4.1.15.jar

SNT-4.1.14

Improved/Fixed:

• Fix import of SWC files saved using commas as decimal separator (#147)
• Fix missing dependency from update site (details)
• Image-based Sholl:
  • Fix preview of shell on images with non-zero origin (#144)
  • Fix "Re-analyze" option not working for 3D images
  • Improve "Options & Preferences" dialog
• Updated dependencies (#145)

Full Changelog: SNT-4.1.13...SNT-4.1.14
Compiled artifact (without dependencies): SNT-4.1.14.jar

SNT-4.1.13

New:

• Render_ML_somata template script

Improved/Fixed:

• Updated dependencies (#141, #142, #143)
• Startup size of Reconstruction Viewer canvas on MacOS (#140)
• Misc

Full Changelog: SNT-4.1.12...SNT-4.1.13
Compiled artifact (without dependencies): SNT-4.1.13.jar

SNT-4.1.12

Improved:

• Reconstruction Viewer's debug mode
• Command Palette

Fixed:

• Certain dialog prompts not being displayed from API calls
• Exception when saving Reconstruction Viewer's snapshots
• Exception when handling multiple items in Reconstruction Viewer's list

Full Changelog: SNT-4.1.11...SNT-4.1.12
Compiled artifact (without dependencies): SNT-4.1.12.jar

SNT-4.1.11

Improved:

• Reconstruction Viewer:
  • Popup messages are now displayed in a status bar to improve the reliability of single-key shortcuts
  • Improved HiDPI fonts
  • Improved consistency of keyboard shortcuts
  • SNTSnapshots folder is only created when taking scene snapshots
  • Updated jzy3d dependencies

Fixed:

• VFB connections

Full Changelog: SNT-4.1.10...SNT-4.1.11
Compiled artifact (without dependencies): SNT-4.1.11.jar

SNT-4.1.10

Improved:

• Drag & Drop support added to the Neuronatomy Shortcuts Window(*)
• Quick measurements no longer includes not-so-common metrics
• Reconstruction Plotter includes an option to open dendrogram(s)
• "About" dialog now displays full system information

Fixed:

• Exception in Strahler Command
• Dialog prompts appearing behind other windows in MacOS
• Fixed exaggerated dimensions of some components (splash screen, About dialog, etc.) on MacOS

Full Changelog: SNT-4.1.9...SNT-4.1.10
Compiled artifact (without dependencies): SNT-4.1.10.jar

(*) typical usage scenario: you have some SWC files laying around and would like to quickly see how they look: Press the SNT button in the IJ toolbar, drag & drop them into the Shortcuts window, and you are all set (@bogovicj, 😉)

SNT-4.1.9

Fixed:

• Broken MouseLight queries

Full Changelog: SNT-4.1.8...SNT-4.1.9
Compiled artifact (without dependencies): SNT-4.1.9.jar

SNT-4.1.8

New:

• Support for ndf (NeuronJ) data files
• Script: Batch converter saving NeuronJ tracings as ROIs
• Script: Generator of density maps for groups of cells

Fixed:

• Workaround for Legacy 3D Viewer exception (#136)
• Exception in PathStraightener when straightening short segments

Full Changelog: SNT-4.1.6...SNT-4.1.8
Compiled artifact (without dependencies): SNT-4.1.8.jar

SNT-4.1.6

Improvements:

• More functional progress bar in Reconstruction Viewer
• Sholl Bulk Analysis command: Added an option to display outputs
• Update dependencies (#133, #134, #135)

Fixed:

• Empty charts in Strahler Analysis when analyzing multiple reconstructions simultaneously
• Exception on outdated demo script

Full Changelog: SNT-4.1.5...SNT-4.1.6
Compiled artifact (without dependencies): SNT-4.1.6.jar

SNT-4.1.5

Improvements:

• Commands producing multiple charts (e.g., Strahler analysis), now display plots in a combined montage, rather than individual windows
• Improved the widget for the legacy 3D viewer

Fixed:

• SNTChart: Fix ImagePlus conversion of combined plots
• Interactive tracing demo script failing

Full Changelog: SNT-4.1.4...SNT-4.1.5
Compiled artifact (without dependencies): SNT-4.1.5.jar