Fix HDF5 setup when separate_postproc_projects="y"
#1976
Workflow file for this run
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| # Run tests in parallel to check for bugs that only show up on multiple processes | |
| name: Run tests in parallel | |
| on: [push, pull_request, workflow_dispatch] | |
| jobs: | |
| test-ubuntu: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 120 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: 'openmpi' | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: '1.10' | |
| arch: x64 | |
| - run: | | |
| touch Project.toml | |
| julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.add(["MPI", "MPIPreferences", "NCDatasets", "Random", "SpecialFunctions", "Test"]); Pkg.develop(path="moment_kinetics/"); using MPIPreferences; MPIPreferences.use_system_binary()' | |
| julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.precompile()' | |
| # Need to use openmpi so that the following arguments work: | |
| # * `--mca rmaps_base_oversubscribe 1` allows oversubscription (more processes | |
| # than physical cores). | |
| # * `--mca mpi_yield_when_idle 1` changes a setting to prevent excessively | |
| # terrible performance when oversubscribing. | |
| mpiexec -np 3 --mca rmaps_base_oversubscribe 1 julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --debug 1 --force-optional-dependencies | |
| mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --debug 1 --force-optional-dependencies | |
| mpiexec -np 2 --mca rmaps_base_oversubscribe 1 julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --debug 1 --long --force-optional-dependencies | |
| # Note: MPI.jl's default implementation is mpich, which has a similar option | |
| # `--with-device=ch3:sock`, but that needs to be set when compiling mpich. | |
| shell: bash | |
| # macOS is slow at the moment, so only run one set of parallel tests | |
| test-macOS: | |
| runs-on: macOS-latest | |
| timeout-minutes: 120 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: 'openmpi' | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: '1.10' | |
| arch: x64 | |
| - run: | | |
| touch Project.toml | |
| julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.add(["MPI", "MPIPreferences", "NCDatasets", "Random", "SpecialFunctions", "Test"]); Pkg.develop(path="moment_kinetics/"); using MPIPreferences; MPIPreferences.use_system_binary()' | |
| julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.precompile()' | |
| # Need to use openmpi so that the following arguments work: | |
| # * `--mca rmaps_base_oversubscribe 1` allows oversubscription (more processes | |
| # than physical cores). | |
| # * `--mca mpi_yield_when_idle 1` changes a setting to prevent excessively | |
| # terrible performance when oversubscribing. | |
| mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --debug 1 --force-optional-dependencies | |
| # Note: MPI.jl's default implementation is mpich, which has a similar option | |
| # `--with-device=ch3:sock`, but that needs to be set when compiling mpich. | |
| shell: bash |