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Cpp model for IfG workshop #54

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Cpp model for IfG workshop #54

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pratikunterwegs
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This draft PR is primarily aimed at CI runs and to track changes against main.

@pratikunterwegs
Rcpp-Boost implementation
c08fb14
@pratikunterwegs
Rcpp-Boost implementation p2
7a14730
@pratikunterwegs
WIP daedalus_rtm
72bb1a7
@pratikunterwegs
Update with workplace within sector infections
b6f18ed
@pratikunterwegs
Simple fun to apply npi to Eigen array or double
96aa412
@pratikunterwegs
Time-dependent closures on workplaces, WIP
11cf5e1
@pratikunterwegs
Basic test for daedalus C++
b3a48c1
@pratikunterwegs
Update daedalus_cpp with internal looping over params
3b4f657
@pratikunterwegs
WIP daedalus_rtm() using internal Cpp model
4cbf500
@pratikunterwegs
Fn to prepare output from daedalus_rtm
7634817
@pratikunterwegs
Excess mortality and age-varying params
eb96d9a
@pratikunterwegs
daedalus_rtm() compatible with daedalus_class output
637f89e
@pratikunterwegs
prepare_output_cpp() compatible with downstream funs
deb36da
@pratikunterwegs
Code formatting after linting
3a370e5
@pratikunterwegs
Correct within workplace infected calculation
5b0d858
@pratikunterwegs
Allow external community transmission redn mandate
e897056
@pratikunterwegs
Add consumer-worker infections
0d36871
@pratikunterwegs
Add econ sector names
cb2a1ea
@pratikunterwegs
Add daedalus_rtm() tests
560494e
@pratikunterwegs
Update misc documentation
e2de4c7
@pratikunterwegs
Rm {epidemics} dependency
4936d98
@pratikunterwegs
Normalise desc, add RcppEigen
29c0d44
@pratikunterwegs
Add RcppExports to linter exceptions
01878eb
@pratikunterwegs
Correct closure duration calculations
feb20ab
@pratikunterwegs
Add tests for closures costs
133db05
@pratikunterwegs
Rm extra non-portable flags
3afdd43
@pratikunterwegs
Correct closure duration logging for future closures
e109e87
@pratikunterwegs
Add per-sector GVA losses from closures and absences
947a828
@pratikunterwegs
Export life expectancy values in country objs
99fd2c7
@pratikunterwegs
get_costs() returns life years lost
cc26f6d
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@pratikunterwegs