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Collect MBON dataset DOI, download, and use statistics from OBIS and GBIF API #69

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MathewBiddle opened this issue May 2, 2024 · 8 comments · Fixed by #74
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@MathewBiddle
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I wrote a clunky python notebook here https://github.com/MathewBiddle/sandbox/blob/main/notebooks/MBON_OBIS_statistics.ipynb

@sformel-usgs wrote something in R I believe.

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@MathewBiddle
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@MathewBiddle
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Code from Steve:
xmbon_stats.zip

@MathewBiddle
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@laurabrenskelle Should we write something in python or R? We have the start to both options.

@MathewBiddle
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My vote is for python because it would be easier to add to the ioos_metrics library.

@laurabrenskelle
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Sure, I think both options will work. I am more familiar with R, but since we have starts for both and the ioos_metrics library is in python, python seems like a good choice.

@MathewBiddle
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MathewBiddle commented May 21, 2024

Tasks:

  • run Steve's R
  • Run Matt's python
  • Compare results
  • Update python to align with Steve's code
  • Migrate Python code as function to ioos_metrics

@MathewBiddle
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Just found this: https://pygbif.readthedocs.io/en/latest/index.html maybe pygbif is the right approach?

@MathewBiddle
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xref: #74

@MathewBiddle MathewBiddle linked a pull request May 23, 2024 that will close this issue
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2 participants